Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6322 113 5e-20 seq2307 89.7 5e-13 seq465 86.0 6e-12 >seq6322 Length=173588 Score = 113 bits (124), Expect = 5e-20 Identities = 148/204 (73%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || || || ||||| ||||| || || ||| ||||||| || ||||| ||| | ||| Sbjct 119590 TTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGAAGGCTGACTGGGCCCTGTGTTGG 119649 Query 117008 ATC-GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 || | | || |||||| ||| || || || | ||| |||| || || || || || Sbjct 119650 ATTTGGAGACAAAGAGGCTACCTATGGAGAACGAGTTGTGACCTTTGCTGCTGTAGAAGG 119709 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 ||||||| || ||| ||| || | ||||| ||||||||||||| || || ||||| Sbjct 119710 GATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGGCTCAAGAAACAGGGACTGATGCC 119769 Query 117127 CGGCCTGACTTTCAGCAACGAGCT 117150 ||||| || || ||||||||| Sbjct 119770 TGGCCTTACATTTTCCAACGAGCT 119793 >seq2307 Length=4779897 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||||||||| || ||||| || ||||| ||||| || || || || || || || | Sbjct 580410 TGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCTGCTATCTTCT 580469 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | |||||||||||||| || |||||| || || |||||| ||||| Sbjct 580470 GGCTGAAGAAGAGAGGCCTCATGCCCGGACTCACTTTCTCGAATGAACTCATCAGCAGGG 580529 Query 117162 ACGA 117165 | || Sbjct 580530 ATGA 580533 >seq465 Length=581878 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 |||||||||| ||||| || || || ||||||||| | || | || ||| Sbjct 114801 AAATGCAAATCTTCGTGAA---------GGTGAAGACCATCACCCTGGAGATGGAGCCCA 114851 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAA-GAGGGCATCCCCGCGGAC 40806 |||| | | | | |||||| || || | || ||| |||||||| ||| | Sbjct 114852 GTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAAAGAGGGCATTTCCGGCTCC 114911 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||||||||| || ||||| |||||||| || | |||| ||| || ||| Sbjct 114912 CAGCAGCGACTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCTGCACTCTCTCTGATTAC 114971 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||| ||| |||| ||||| || || Sbjct 114972 AACGTCCAGAAAGAGTCCACCCTGCACCTGGT 115003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513736643871520