Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq427 105 8e-18 seq6768 102 9e-17 seq2360 98.7 1e-15 seq458 98.7 1e-15 seq2592 95.1 1e-14 seq2352 93.3 5e-14 seq630 93.3 5e-14 seq6256 89.7 6e-13 seq955 84.2 2e-11 >seq427 Length=2250747 Score = 105 bits (116), Expect = 8e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 748522 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 748581 Query 60124 TATACTACCGAGGATTGA 60141 ||||||| |||||| ||| Sbjct 748582 TATACTAACGAGGAGTGA 748599 >seq6768 Length=181965 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 68665 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 68606 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 68605 ATACTAACGAGGAT 68592 >seq2360 Length=223721 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 157314 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 157373 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 157374 TACTAACGAGGA 157385 >seq458 Length=2134099 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1500490 TCTCCCCGTTGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1500549 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 1500550 ATACTAACGAGGAT 1500563 >seq2592 Length=5982234 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || Sbjct 4852057 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACAAG 4852116 Query 60136 GA 60137 || Sbjct 4852117 GA 4852118 >seq2352 Length=313243 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| | | ||||| ||||||| ||||||||||||||||||||| ||||||||| Sbjct 309917 TTTTCTCCCCATCGGGGAAACGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 309858 Query 60122 ACTATACTACCGAGGA 60137 ||||||| | |||||| Sbjct 309857 ACTATACAAACGAGGA 309842 >seq630 Length=1336326 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| |||||| ||||||||||||| ||||||||||| Sbjct 764765 TTCTCCCCGTCGGGGAATCGAACCCCCGTCTCCAGCGTGACAGGCGGGTATACTCACCAC 764824 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 764825 TATACTAACGAGGA 764838 >seq6256 Length=967024 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| |||||||||||||||| | |||| Sbjct 337097 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACAAACGAG 337038 Query 60136 GA 60137 || Sbjct 337037 GA 337036 >seq955 Length=1667415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 60079 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||||||||||| ||| |||||||||||| | |||||| Sbjct 1344548 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATATTCACCACTATACAAACGAGGA 1344490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570172180560560