Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1093 93.3 4e-14 seq6322 87.8 2e-12 seq2307 86.0 6e-12 seq13898 84.2 2e-11 >seq1093 Length=1386444 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | |||||| ||||||||||| || ||||| ||||| ||||| || Sbjct 281503 TCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 281562 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| || ||||| ||||| || ||||| | || ||||| || Sbjct 281563 AGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCAAAGCAGCAAAGGCC 281622 Query 16379 ACCAATCGCTCACC 16392 || | ||| || || Sbjct 281623 ACAACTCGTTCTCC 281636 >seq6322 Length=173588 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 16276 CTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGC 16335 |||||| ||||||||||| || ||||| ||||| |||| || | ||| ||||| | || Sbjct 119791 CTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGATGC 119732 Query 16336 AAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA 16395 ||| || ||||| ||||| || ||||| || || ||||| | || | ||| || || || Sbjct 119731 AAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCACAACTCGTTCTCCATA 119672 Query 16396 CGT 16398 || Sbjct 119671 GGT 119669 >seq2307 Length=4779897 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 || || ||| ||||| ||| ||||||||||| ||||| ||||| || || || |||||| Sbjct 587697 TGGTACTCAGAAACTCGCTTCTCAAAGAAATTCGTTTTCCCTTCCAACGAGATGTTTTCC 587638 Query 16007 ATAAAATCAAAAGGATTTTTTG 16028 ||||||||||| ||||||| || Sbjct 587637 ATAAAATCAAAGGGATTTTCTG 587616 >seq13898 Length=23741 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 15897 TATCTA-GAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCA 15955 |||||| || |||| | ||| ||| | ||||||||| || ||| | ||| | || Sbjct 6014 TATCTAAGATAAAAGA-ATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGACACTCG 6072 Query 15956 CTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCA 16015 | ||| ||| |||||||| ||||| || |||| || ||||||||||||||| || ||| Sbjct 6073 CCCACTTGCTTCTCAAAGAAGTTTGTCTTCCCTTGTAGTGAAATATTTTCCATGAAGTCA 6132 Query 16016 AAAGGATTTT 16025 || ||||||| Sbjct 6133 AACGGATTTT 6142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461181110157200