Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq98 1178 0.0 seq1997 116 3e-21 seq1212 86.0 4e-12 >seq98 Length=1325513 Score = 1178 bits (1306), Expect = 0.0 Identities = 1047/1306 (80%), Gaps = 10/1306 (1%) Strand=Plus/Minus Query 107336 GAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGT 107395 |||||| || || | ||||| ||||| ||||||||||||| ||||||||||| || | Sbjct 559790 GAAGCTCTGTTGGCGCTATCATGTGTGGACCCTGGGCTGCTACATGCTGCTGGCTGTCAT 559731 Query 107396 TTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAG 107455 | |||||| ||| |||||||| | || ||||| | ||| | |||||||| | || | Sbjct 559730 TGCTCTGAAACTGTCCCTCAGACTGAAGTGTGACTTTGATGTCGTGGATCTGAACTCGAA 559671 Query 107456 GGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAA 107515 ||| || || || |||||||| |||||| | ||||||| | |||||||||||||||||| Sbjct 559670 GGAATTTCAAAGCCAGCACTGCAGGGACTTCCTGTACAAGACCCTGAAGCTGCCAGCAAA 559611 Query 107516 GAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCT 107575 ||| |||||||||||||| ||| |||| |||||||| ||| |||||||| ||||||| || Sbjct 559610 GAGGTCCATCAACTGTTCCGGGGTCACTCGAGGGGAGCAGAAAGCAGTGATCCAGGCTCT 559551 Query 107576 CCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAA 107635 || | || ||||| | ||||| |||||| ||| |||| | || | ||||| | Sbjct 559550 GCTGAATAATCTGGAGATTAAGAAGAAGCGGCAGCCCTTCACAGAGGCCGACTACCTTAG 559491 Query 107636 CATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAG 107695 ||| || ||||||| ||| |||||| || |||||||||||||||||||| ||||||| Sbjct 559490 CATGACAGCAGACTGTCAGCAATTCAAGACCAAAAGGAAGTTCATACAGTTCTCACTGAG 559431 Query 107696 TAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAA 107755 |||||||||| ||||| ||||| || || || |||||||| ||||||||||| || || Sbjct 559430 TAAAGAAGAGGCCGACTTTCCCATCGCGTATTCCATGGTGGTTCATGAGAAGATCGAGAA 559371 Query 107756 CTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 ||||||| |||||||||| || ||||| ||||||| ||||||||||||||||||||||| Sbjct 559370 CTTTGAAAGGCTGCTGCGCGCTGTGTACACCCCTCAAAACATATACTGTGTCCACGTGGA 559311 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAA 107875 | ||||||||||| |||||||| ||||||||| ||||||| | || ||||| || || Sbjct 559310 TCAAAAGTCCCCAGAAACTTTCAAGCAGGCGGTCAGGGCCATTGTGTCATGCTTTCCAAA 559251 Query 107876 TGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGC 107935 |||||| || || |||||| |||| | ||||| ||||| ||||||||||| ||||| || Sbjct 559250 TGTCTTTATAGCTAGTAAGCTGGTGTCAGTGGTCTATGCTTCCTGGTCCAGGGTGCAGGC 559191 Query 107936 TGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAA 107995 |||||||||||| ||||||||||| |||||||||| ||||||||||| ||| | ||||| Sbjct 559190 TGACCTGAACTGCATGGAAGACTTAGTCCAGAGCTCCGTGCCATGGAAATACCTCCTGAA 559131 Query 107996 TACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGAT 108055 || || ||||||||||| ||||| ||||||||||| |||||||||| |||||||||| | Sbjct 559130 CACCTGTGGGACAGACTTTCCCATCAAGACCAATGCTGAGATGGTCCAGGCCCTCAAGCT 559071 Query 108056 GTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa----TC 108111 ||||| || |||||||||||||||| |||||||| | ||| | |||| || Sbjct 559070 ATTGAATGGGCAGAACAGTATGGAGTCAGAGGTACCACC----CCCACATAAAAGGTTTC 559015 Query 108112 GCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACC 108171 ||||| |||| ||||||||||||| ||||||| ||||| |||| |||||| ||| || Sbjct 559014 GCTGGGAATATCGCTATGAGGTGAAAGACACATTGTACAATACCGGCAAGAGAAAGACCC 558955 Query 108172 CTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCT 108231 |||| ||| |||| || ||||||| || ||||||||||| | ||||| ||||||| || Sbjct 558954 CTCCGCCTTATAACATAACCATGTTTACTGGGAATGCCTACATGGTGGCTTCTCGAGACT 558895 Query 108232 TTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACA 108291 | | ||||||| ||| ||||| | ||| ||||| ||| | ||||||| ||||||| Sbjct 558894 TCATTGAACATGTTTTAAACAACACCAAAGCCCAACAACTAATCGAATGGGCAAAAGACA 558835 Query 108292 CCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCT 108351 |||| || || || || ||||| ||||||||||| |||||||| | ||||||||||| | Sbjct 558834 CCTACAGTCCTGATGAGCACCTTTGGGCCACCCTCCAGCGTGCCTCCTGGATGCCTGGAT 558775 Query 108352 CTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCA 108411 | | ||| |||||||| | | || |||||||||||| || || || ||||| || Sbjct 558774 CAGCTCCCTTGCACCCCAAATTTGACCTCTCAGACATGAGAGCTATTGCAAGGCTAACCA 558715 Query 108412 AGTGGCAGTACCACGAGGGAGATGT-CAGCATGGGGGCGCCTTATGCACCCTGCTCTGGA 108470 |||||||| ||||||||||||| | || || ||||| ||||| |||| || || ||| Sbjct 558714 AGTGGCAGGACCACGAGGGAGACATAGAGGAT-GGGGCACCTTACACACCTTGTTCAGGA 558656 Query 108471 ATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAAC 108530 |||| | | |||| |||| ||||| ||| | ||||||||| ||||||| || |||||| Sbjct 558655 GTCCACCAGCGGGCTGTCTGTATTTATGGGTCTGGGGACCTGCACTGGATACTTCAGAAC 558596 Query 108531 CATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTA 108590 |||||||||||||| |||||||||||||| | |||||||||||| || || ||||| ||| Sbjct 558595 CATCACCTCTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATGTTCTTCAGTGTTTA 558536 Query 108591 GAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 || || || ||||||| || |||||||||||||||||||| |||| Sbjct 558535 GAGGAATATTTACGTCACAAAGCCATCTATGGGACTGAACTGTGAG 558490 >seq1997 Length=3328139 Score = 116 bits (128), Expect = 3e-21 Identities = 242/358 (68%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||| ||| |||||| ||||| || ||||| || ||||| ||| | ||| Sbjct 1509509 CCCCTTAGTAAAGAGGAGGCAGACTTTCCCATCGCATACTCCATAGTGGTTCATCACAAG 1509450 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | || || | Sbjct 1509449 ATTGAAATGCTTGAGAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 1509390 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || | ||| | ||| || ||||| | || |||| |||||| Sbjct 1509389 CACGTGGACAAAAAAGCAGAGGAGCCCTTCTTAGCCGCGGTGATGGGCATTGCGTCCTGC 1509330 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| ||||||| || ||| || |||||||| |||||| | Sbjct 1509329 TTGAAGAATGTCTTTGTGGCCAGCCAGCTGGAGAGCGTTGTTTATGCATCCTGGAGTCGG 1509270 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCT--CCAGAGCTCAGTGCCA--TGGAA 107983 || || |||||||| ||||| ||| ||| || ||| | ||| | | ||||| Sbjct 1509269 GTTCAGGCTGACCTCAACTGCATGAGGGACCTGTATGCCA----TGAGTACAAACTGGAA 1509214 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||| | || || || | |||||||| || || ||||| || |||||| Sbjct 1509213 GTACTTGATCAACCTCTGTGGTATGGACTTCCCTATTAAAACCAACCTGGAAATGGTC 1509156 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/193 (72%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 108288 GACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TGCC 108346 ||||| |||||||| || || |||||||||||||| | || | | ||| || | | || Sbjct 1508906 GACACGTATAGCCCAGATGAGTACCTCTGGGCCACCATCCAAAG-GATCCCTGAAGTCCC 1508848 Query 108347 TGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 ||| ||| | || ||||| |||||| || | || ||||||| ||| |||| || Sbjct 1508847 TGGTTCTCTCCCCTCGAGCCAT---AAGTATGACTTGTCCGACATGAATGCTGTCGCTAG 1508791 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 | | ||||||||||||||| || || ||||| || || || ||||| |||| || Sbjct 1508790 GTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAAGGCGCTCCTTACCCACCGTG 1508731 Query 108464 CTCTGGAATCCAT 108476 | ||| ||||| Sbjct 1508730 CAGCGGAGTCCAT 1508718 >seq1212 Length=2107759 Score = 86.0 bits (94), Expect = 4e-12 Identities = 226/338 (67%), Gaps = 14/338 (4%) Strand=Plus/Minus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGA-TTGAAAAC 107756 |||||||| | ||||||| | |||||| |||||| |||| | ||| || || || Sbjct 1596618 AAGAAGAGGCTGCCTTCCCCCTGGCCTACGTCATGGTGATCCACAA--AGACTTCAACAC 1596561 Query 107757 -TTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 |||||| |||| | | ||| | || | || ||||| | ||||| || |||||||| Sbjct 1596560 CTTTGAAAGGCTCTTCAGGGCCATTTACACGCCCCAGAATGTCTACTGCGTGCACGTGGA 1596501 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCC-TGCTTCCCCA 107874 || ||| |||||| || || ||| | ||||| ||| ||| | |||||||| | Sbjct 1596500 TGAGAAAGCCCCAGGGAAGTTTAAAAAAGCGGTGT-GGCAGTTACTCGAGTGCTTCCCGA 1596442 Query 107875 ATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAG 107934 | | || |||| |||| |||||| |||| || ||| | | || | Sbjct 1596441 ACGCTTTTCTGGCTTCTAAGACTAAGAAGGTGGTCTATGGTGGCTTCTCCCGGCTCCAGG 1596382 Query 107935 CTGACCTGAACTGTATGGAAGA----CTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTA 107990 | ||||||||||| |||||||| | ||| | || || || ||||| ||| | Sbjct 1596381 CAGACCTGAACTGCATGGAAGATCTGTTGGCTTCCAAG----GTCCCCTGGAAATACGTC 1596326 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || || |||||| ||||||||| | || ||||| Sbjct 1596325 CTCAACACCTGCGGGCAGGACTTCCCCCTGAAAACCAA 1596288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347291701625748