Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq6322 120 3e-22 >seq6322 Length=173588 Score = 120 bits (132), Expect = 3e-22 Identities = 161/223 (72%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 14242 AAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGC 14301 ||| ||||| |||||||| | || ||||||| ||| |||| || | ||| ||||||| Sbjct 119794 AAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGA 119735 Query 14302 AGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14361 || || || || || ||||| || || || || |||||||| | | | ||||||||| Sbjct 119734 TGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCACAACTCGTTCTCC 119675 Query 14362 AAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAA 14420 | | | || | ||||| || | ||||| ||||| |||| || ||||| | | Sbjct 119674 ATAGGTAGCCTCTTTGTCTCCAAATCCAACACAGGGCCCAGTCAGCCTTCTTTTTCACAC 119615 Query 14421 AATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTT 14463 || |||||| ||||||||||| || | || |||| ||||||| Sbjct 119614 AAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTT 119572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480957638477360