Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12441 113 6e-20 seq4246 102 1e-16 seq1093 96.9 4e-15 seq2307 89.7 6e-13 >seq12441 Length=306159 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 76075 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 76134 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 76135 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 76194 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 76195 CTGTTTCTTATACCATA 76211 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||||||||| |||||| ||| | || || || || ||||| | Sbjct 72781 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 72840 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | |||||| |||||||||||||| || || || || || ||||| || | | |||| Sbjct 72841 TTAAAGATTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 72900 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | || ||||| | || ||||| | |||| | || || |||| Sbjct 72901 TCTGAGAGATCTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 72951 >seq4246 Length=1546646 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | ||| | |||||||| || |||||||||| || ||| Sbjct 88353 GTTACTTTCTATGATGTATACCTGGTTCTGCAAGCTTTTATACTGACTACTGCGGTCTTT 88412 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| ||||| | | ||||||||| ||||||||||||||||| ||| ||| | |||| Sbjct 88413 CTTGGCTTGACTGCCTATACTCTACAGTCAAAGAGAGATTTCAGCAAATTTGGAGCAGG 88471 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||||||||||||||| ||||||||||| | ||||| ||||| || |||||||||||| Sbjct 74768 TGCTCCTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCCTCGGCCAGCGTGCAC 74827 Query 188232 ATACGAATGG 188241 || || |||| Sbjct 74828 ATCCGCATGG 74837 >seq1093 Length=1386444 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||||| ||||| || || || ||||| || || || || | Sbjct 281501 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 281560 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || || |||||||| ||||| | |||||||||| Sbjct 281561 TGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCAAAGCAGCAAAGG 281620 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || ||||| Sbjct 281621 CCACAACTCGTTCTCC 281636 >seq2307 Length=4779897 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || || || || || | ||| || || || |||||||||||||| ||||| | ||| || Sbjct 580533 TCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 580474 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| || || | ||| ||||| || || ||||| | ||||| || ||||||||||| Sbjct 580473 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 580415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628005284110560