Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6322 138 1e-27 seq4246 138 1e-27 seq12441 116 5e-21 seq1093 105 9e-18 seq116398 100 4e-16 seq2307 93.3 6e-14 >seq6322 Length=173588 Score = 138 bits (152), Expect = 1e-27 Identities = 156/207 (75%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 ||||||||||| || || || ||||| || || | || || ||||| ||||| || ||| Sbjct 119790 TCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGATGCA 119731 Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA- 36318 || || ||||| ||||| || |||||||| || ||||||| | || || |||||||| Sbjct 119730 AAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCACAACTCGTTCTCCATAG 119671 Query 36319 --ACCGGCACTGTC-ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 | | | |||| ||||| | ||||| || ||||||||||| |||||||| Sbjct 119670 GTAGCCTCTTTGTCTCCAAATCCAACACAGGGCCCAGTCAGCCTTCTTTTTCACACAAGG 119611 Query 36376 CATTGTCTCTATAGCATTAAAGAGATA 36402 ||||||||| |||||||| |||||||| Sbjct 119610 CATTGTCTCAATAGCATTGAAGAGATA 119584 >seq4246 Length=1546646 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||||||||||||||| ||||||||||| ||||||| ||||| Sbjct 88471 CCTGCTCCAAATTTGCTGAAATCTCTCTTTGACTGTAGAGTATAGGCAGTCAAGCCAAGA 88412 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || ||||||||||| || |||||||||| ||| | | ||||||||||||||||| Sbjct 88411 AAGACCGCAGTAGTCAGTATAAAAGCTTGCAGAACCAGGTATACATCATAGAAAGTAAC 88353 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| || ||||| ||||||| ||||||||||| ||||||| Sbjct 74837 CCATGCGGATGTGCACGCTGGCCGAGGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 74778 Query 9907 TGGAGGAGCA 9916 |||||||||| Sbjct 74777 TGGAGGAGCA 74768 >seq12441 Length=306159 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 76075 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 76134 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 76135 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 76194 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 76195 CTGTTTCTTATACCATA 76211 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 96476 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 96535 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | |||||| | || || ||| | || || |||||||| |||| Sbjct 96536 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 96595 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || ||||| | || | |||||||| || ||||| Sbjct 96596 GTTCCACTGTGGTGACTCCGCTGTACAGGCCTTGGATTACTTTCAT 96641 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||||||||| |||||| ||| | || || || || ||||| | Sbjct 72781 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 72840 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | |||||| |||||||||||||| || || || || || ||||| || | | |||| Sbjct 72841 TTAAAGATTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 72900 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | || ||||| | || ||||| | |||| | || || |||| Sbjct 72901 TCTGAGAGATCTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 72951 >seq1093 Length=1386444 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||||||||||| || || || ||||| || || || || | Sbjct 281501 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 281560 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| |||||||| || ||||| ||||| || ||||| | || ||||||| Sbjct 281561 TGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCAAAGCAGCAAAGG 281620 Query 36300 CAATAAGTCTCTCTCC 36315 | | || || ||||| Sbjct 281621 CCACAACTCGTTCTCC 281636 >seq116398 Length=207 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 ||||||| ||| || ||||| ||||||| |||||| ||||| ||||| | || |||||| Sbjct 120 AACATCAGACAGGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAA 61 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 ||||| || || ||||| || || || || ||||| ||||| |||||||| || ||| Sbjct 60 AACGTAAGGCCAGGCATCAGTTTCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCA 1 >seq2307 Length=4779897 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || || || || || | ||| || || || |||||||||||||| ||||| | ||| || Sbjct 580533 TCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 580474 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| || || | |||||||| ||||| ||||||| ||||| || || |||||||| Sbjct 580473 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 580415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656278891313680