Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq14975 87.8 2e-12 seq7520 84.2 2e-11 >seq14975 Length=1981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 21439 CCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTA 21498 || |||||||||||||||||||||||| |||||| |||| ||||| |||||||| || | Sbjct 1243 CCTTGATAAACCACAGCAACTCCTCCAAAACGCCCTTCCAGAACACTCTTTTGGTTGTGA 1302 Query 21499 ACAGAGGAAACTCGTC 21514 ||||||||| || || Sbjct 1303 GCAGAGGAAATTCATC 1318 >seq7520 Length=394677 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 21442 TGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACA 21501 ||||||||||||||||||||| || || ||| || | || || | |||||| || | || Sbjct 308952 TGATAAACCACAGCAACTCCTTCAAAACACCCTTCTAGAAAACTCGTTTGGTTGTGAGCA 308893 Query 21502 GAGGAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCC 21560 ||| ||| || || || ||||| ||| | |||| | || ||||| ||| ||||||| Sbjct 308892 GAGAAAATTCATCTCTCAGGTTGTATGGTGCCTACATGCCTAACACCGACAAGGTGCCC 308834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426575837268960