Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq116398 109 4e-19 seq1093 87.8 1e-12 >seq116398 Length=207 Score = 109 bits (120), Expect = 4e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22782 TGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTT 22841 ||| || |||||| | ||||||||||| |||||||| || ||||| || | |||| Sbjct 1 TGGCTCTTTTGCGTCAATATTCTGGCTCAAGAAACGGAAACTGATGCCTGGCCTTACGTT 60 Query 22842 TTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 |||||| ||| | |||||| | || || ||| |||||||||| ||||| ||| || |||| Sbjct 61 TTCCAATGAGCTTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCCTGTCTGATGTT 120 Query 22902 TAGGCAAATGGCAAACAAACCGT 22924 ||||| ||| | |||| |||| Sbjct 121 CAGGCACCTGGTACACAAGCCGT 143 >seq1093 Length=1386444 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||| | ||||| || | || ||||| || |||||| | |||||||||| Sbjct 281623 TGGCCTTTGCTGCTTTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCGTCAATATTCTGGC 281564 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | | |||||||||||| | |||||| | || | Sbjct 281563 TCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATTAGCAGAGATG 281504 Query 22868 A 22868 | Sbjct 281503 A 281503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355234155687406