Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq6322 129 6e-25 seq116398 84.2 2e-11 >seq6322 Length=173588 Score = 129 bits (142), Expect = 6e-25 Identities = 163/223 (73%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 13910 AAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGC 13969 ||| ||||| |||||||| | || ||||||| ||| |||| || | ||| ||||||| Sbjct 119794 AAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGA 119735 Query 13970 AGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 ||||| || || || ||||| || || || || |||||||| | | | ||||||||| Sbjct 119734 TGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCACAACTCGTTCTCC 119675 Query 14030 AAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAA 14088 | | | || | ||||| || | ||||| ||||| |||| || ||||| | | Sbjct 119674 ATAGGTAGCCTCTTTGTCTCCAAATCCAACACAGGGCCCAGTCAGCCTTCTTTTTCACAC 119615 Query 14089 AATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT 14131 || |||||| ||||||||||| || | ||||||| ||||||| Sbjct 119614 AAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTT 119572 >seq116398 Length=207 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 || || | ||| ||||||||||| || | ||||||||||| |||||||| || || ||| Sbjct 120 AACATCAGACAGGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAA 61 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 || || | || ||||||| | ||||| || | ||| ||||||| ||||| || || Sbjct 60 AACGTAAGGCCAGGCATCAGTTTCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478347570686800