Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq116398 91.5 1e-13 seq2307 84.2 2e-11 >seq116398 Length=207 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 || ||| | ||||||| ||| |||||||||||||| || || |||||||| || || ||| Sbjct 129 AGGTGCCTGAACATCAGACAGGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGC 70 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 || || ||||| || || || ||||| || ||||| || | ||| ||||| | ||| Sbjct 69 TCATTGGAAAACGTAAGGCCAGGCATCAGTTTCCGTTTCTTGAGCCAGAATATTGACGCA 10 Query 13253 AACGAACC 13260 || || || Sbjct 9 AAAGAGCC 2 >seq2307 Length=4779897 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| || ||||||||||| ||| ||||||||||||| || | Sbjct 586398 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCATTCCAATGAGG 586339 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| |||||||| | ||| Sbjct 586338 CCGACAGGCAAGGCTTCTGTCAGAAA 586313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429773241435204