Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq26544 141 2e-28 seq2179 95.1 3e-14 seq1905 89.7 1e-12 >seq26544 Length=151321 Score = 141 bits (156), Expect = 2e-28 Identities = 146/190 (77%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 104377 AATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCT 104436 ||| || |||||| | | ||| || ||||||| |||||| |||| || || ||||| Sbjct 103742 AATGTTGTAGTCAAAGAAAGTAAGGCCATCTTCTACTTGTTTACCAGGGAAGATCAGCCT 103683 Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| |||| |||||| ||||||||||||||||||||||| || ||| |||||||| || Sbjct 103682 CTGATGATTAGGAGGAATTCCTTCTTTATCCTGAATCTTGGCCCTTATATTTTCTATAGT 103623 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 || ||||| | ||| ||||| ||||| || || |||| || || ||||| | ||| Sbjct 103622 GTCTGAGGGTTCAATCTCAAGTGTGATAGTTTTCCCCCTAAGGGTCTTGACAAAAACCTG 103563 Query 104557 CAT-TTTGTG 104565 ||| |||||| Sbjct 103562 CATCTTTGTG 103553 >seq2179 Length=1209437 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||| ||||| ||||| || |||||| | || || ||||| || || Sbjct 665142 TGAAAGGTAGACTCTTTTTGAATGTTGTAGTCAAA----GTATGGCCATCTTCCAGCTGC 665197 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 | ||||| |||| ||||| | |||| ||| |||| |||||| |||| ||| | Sbjct 665198 TAACCAGCCAAAAGCAGCCTTAGCCAATCAAGAGAATTTCCCTCTTTAACCTGGATCGTG 665257 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | |||||||||||||| | ||| | ||| |||| || || || ||||| || || Sbjct 665258 GTTTTTACATTTTCTATAGCATCTGAGGATTCAGCCTCAAGGGTGATGGTCTTCCCCATA 665317 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || |||||||| ||||| || Sbjct 665318 AGGGTCTTTACAAAAATCTGTAT 665340 >seq1905 Length=2355956 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || ||||||||||| || ||||| || ||| ||||||| |||||||| Sbjct 1405090 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTTTGCTGA-CAGGAGGAATTCCTTCC 1405032 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTA 104492 ||||| || ||||| || || |||||||||| Sbjct 1405031 TTATCATGGATCTTGGCCTTGACATTTTCTA 1405001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148002392877016