Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq2928 102 7e-17 >seq2928 Length=1604220 Score = 102 bits (112), Expect = 7e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||| | || ||||| | | || || ||||| ||||||||| ||| |||||||||| Sbjct 1330722 GGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGGTGATG 1330663 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||| || || ||||| || || ||||| ||||| | ||||| |||||||| ||| Sbjct 1330662 CCCCAGGCAGAGAACCACGGCCCAGAAATCAAGGAGCATTTGAACTCCCTGGGAGAGAAG 1330603 Query 128994 CTCAAAACGCT 129004 || || || || Sbjct 1330602 CTGAAGACCCT 1330592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446461987030240