Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq427 89.7 3e-13 seq999 84.2 1e-11 >seq427 Length=2250747 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||| Sbjct 752340 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCA 752399 Query 11514 ACTGAGCTAATGGGCCGTCGACGATT 11539 |||||||||| |||| | |||||| Sbjct 752400 ACTGAGCTAACCGGCCAGCTACGATT 752425 >seq999 Length=1899294 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 ||| | |||||| | |||||||||| ||||||| ||||||||||||| ||||||| Sbjct 186540 TCATACTGGCCCGTACGGGGATCGAACCCGCGACCTTAGCGTTATTAGCACCACGCTCTA 186599 Query 11510 ACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 186600 ACCAACTGAGCTAACCGGCC 186619 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260757563721352