Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq9765 141 1e-28 seq5500 141 1e-28 >seq9765 Length=354839 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || ||||| |||||||| ||||| || | || || || ||| ||| Sbjct 241111 AAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATTC 241170 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| |||||||||||||| |||||||| | ||| | |||||||| || |||||| Sbjct 241171 CCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAGATG 241230 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || |||||||| | || || | ||| ||||| | || |||||||| Sbjct 241231 GAGTTGGGCTGGCACTTTTCCAGAAGCAACCCTGGGTAGAACTCTAAGGCATCGATGTCA 241290 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||| || || | || || || |||||||| ||||||| Sbjct 241291 CCGTACAGCTCCTCCAACTCAGCTGCCATTTCCTTCTCTCCTG 241333 >seq5500 Length=354892 Score = 141 bits (156), Expect = 1e-28 Identities = 203/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || || |||||| || ||||| || | ||| | |||| ||| Sbjct 128530 AAGGGACAGCCCTTCACATTATTACAGATGAGCGACTGAATGGAGGCAGTGTTGATAATC 128471 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| ||||| ||||| || || ||||| || |||||||| ||| || |||||| Sbjct 128470 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGCGGAGAACAGATGGGA 128411 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| |||| || ||| Sbjct 128410 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 128351 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | ||||| ||||||||||||| | | | |||| ||||| || || ||| Sbjct 128350 ATAGCATCTGGACGTGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCAATG 128291 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||| ||||| | || ||||| |||||||| ||||||| Sbjct 128290 TCACTGTAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCTG 128245 Score = 138 bits (152), Expect = 2e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || || |||| || ||| || ||||| || |||| || ||||| |||||| Sbjct 126993 GTCTGGAAGAGCCGTTCATCCTCCCACTCAGGATGCTCCTGTTTAAGCACATCACACACT 126934 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 |||||||| |||| |||||||| || || |||||||| |||||||||||||| ||||| Sbjct 126933 CTGTTGTGCTCCCGCAGCCAGATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 126874 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || || || | || | || || || | || || |||||||| | Sbjct 126873 ACCTCCTGGCCCACTGCAAACCGTAGATGCTCAGGGGTGTGAGGGGGGTAGATCATCTCT 126814 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||||| |||||||||| ||| ||||||| || || |||| Sbjct 126813 ACCTGGGTGTCTTTGACCGTGGGAGGATACACCTCGCCACCAAT 126770 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||| ||||| | || |||||| | ||| ||| | || Sbjct 125485 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAA 125426 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || || ||||| | || | ||| || ||||| Sbjct 125425 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCGAACATCATATTCGAGCCTTGAGGATC 125366 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 || |||| | |||| |||||| ||| |||| ||| Sbjct 125365 AGGGATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAAC 125327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706486002174880