Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1687 87.8 3e-13 >seq1687 Length=1277798 Score = 87.8 bits (96), Expect = 3e-13 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || |||||||||||||| || || |||||||| || | Sbjct 1223711 CGCCAAGCGACACCGCAAGGTC-CTGCGAGATAACATCCAGGGCATTACCAAGCCTGCCA 1223653 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 1223652 TCCGGCGCTTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 1223593 Query 16551 TTCGTGATGT 16560 ||| | ||| Sbjct 1223592 CTCGCGGTGT 1223583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78864724699986