Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq18410 87.8 1e-12 >seq18410 Length=27303 Score = 87.8 bits (96), Expect = 1e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 |||||| || || |||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 15733 TTTCTCACT-TTAAAAGTTCTTTTCAACTTTCCCTTACTGTACTTGTTGACTATCGGTCT 15675 Query 20004 CGCGGTAATATTTAGCCTTA 20023 || | |||||||||||| Sbjct 15674 CGTGTGGGTATTTAGCCTTA 15655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334007476531862