Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6322 138 1e-27 seq12441 116 5e-21 seq1093 105 8e-18 seq116398 100 4e-16 seq2307 93.3 5e-14 >seq6322 Length=173588 Score = 138 bits (152), Expect = 1e-27 Identities = 156/207 (75%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 ||||||||||| || || || ||||| || || | || || ||||| ||||| || ||| Sbjct 119790 TCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGATGCA 119731 Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA- 32821 || || ||||| ||||| || |||||||| || ||||||| | || || |||||||| Sbjct 119730 AAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCACAACTCGTTCTCCATAG 119671 Query 32822 --ACCGGCGCTGTC-ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 | | | |||| ||||| | ||||| || ||||||||||| |||||||| Sbjct 119670 GTAGCCTCTTTGTCTCCAAATCCAACACAGGGCCCAGTCAGCCTTCTTTTTCACACAAGG 119611 Query 32879 CATTGTCTCTATAGCATTAAAGAGATA 32905 ||||||||| |||||||| |||||||| Sbjct 119610 CATTGTCTCAATAGCATTGAAGAGATA 119584 >seq12441 Length=306159 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 76075 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 76134 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 76135 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 76194 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 76195 CTGTTTCTTATACCATA 76211 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || ||||||||||| |||||| ||| | || || || || ||||| | Sbjct 72781 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 72840 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | |||||| |||||||||||||| || || || || || ||||| || | || |||| Sbjct 72841 TTAAAGATTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 72900 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | || ||||| | || ||||| | |||| | || || |||| Sbjct 72901 TCTGAGAGATCTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 72951 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || |||| || |||| | || || || || || | |||||||| || ||||||||| Sbjct 90242 CTGGACAGCTGTGGACGGTTGGTCCCAGCGTTGAAGAGAGTAGGAGAGGCATGAGTAAAC 90301 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || || |||||||| || ||||| || ||||| || | ||| ||||| || ||||| Sbjct 90302 CACTTCTCAGAAAGCAGGTTGTAGGTTTCAATTGCAGCGTCGATATCTTCTTTGTGAATC 90361 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || || | || | ||| ||||| ||||| ||||||||| Sbjct 90362 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 90400 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 96476 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 96535 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | |||||| | || || ||| | || || |||||||| |||| Sbjct 96536 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 96595 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || || | || | |||||||| || ||||| Sbjct 96596 GTTCCACTGTGGTGACTCCGCTGTACAGGCCTTGGATTACTTTCAT 96641 >seq1093 Length=1386444 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||||||||||| || || || ||||| || || || || | Sbjct 281501 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 281560 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| |||||||| || ||||| ||||| || ||||| | || ||||||| Sbjct 281561 TGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCAAAGCAGCAAAGG 281620 Query 32803 CAATAAGTCTCTCTCC 32818 | | || || ||||| Sbjct 281621 CCACAACTCGTTCTCC 281636 >seq116398 Length=207 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 ||||||| ||| || ||||| ||||||| |||||| ||||| ||||| | || |||||| Sbjct 120 AACATCAGACAGGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAA 61 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 ||||| || || ||||| || || || || ||||| ||||| |||||||| || ||| Sbjct 60 AACGTAAGGCCAGGCATCAGTTTCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCA 1 >seq2307 Length=4779897 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || || || || || | ||| || || || |||||||||||||| ||||| | ||| || Sbjct 580533 TCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 580474 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| || || | |||||||| ||||| ||||||| ||||| || || |||||||| Sbjct 580473 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 580415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631808708079200