Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02]
230,202 sequences; 3,124,140,565 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1093 89.7 6e-13
seq6322 86.0 7e-12
>seq1093
Length=1386444
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202
||||| | || || | |||||| |||||||||||||| |||||||| |||||| |||
Sbjct 281530 AATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCA 281589
Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
|| || || || ||||||| || ||||| ||||||| |||||
Sbjct 281590 GAGAAGAAGATCCCTTCCAAAGCAGCAAAGGCCACAACTCGTTC 281633
>seq6322
Length=173588
Score = 86.0 bits (94), Expect = 7e-12
Identities = 144/207 (70%), Gaps = 1/207 (0%)
Strand=Plus/Minus
Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202
||||| | || || | |||||| ||||||||||||| |||||||| |||||| |||
Sbjct 119781 AATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCA 119722
Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262
|| || || || ||||| || || ||||| | ||||| ||||| || | | ||
Sbjct 119721 GAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCACAACTCGTTCTCCATAGGTAGCCTCT 119662
Query 93263 TT-ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321
|| || | ||||| | ||||| || || || || || | |||||| | ||| ||
Sbjct 119661 TTGTCTCCAAATCCAACACAGGGCCCAGTCAGCCTTCTTTTTCACACAAGGCATTGTCTC 119602
Query 93322 GATAGCGTTAAATAGGTAATCTCGCTC 93348
||||| || || || || || | |||
Sbjct 119601 AATAGCATTGAAGAGATATTCCCTCTC 119575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555258419126480
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |