Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2462 95.1 2e-14 seq557 91.5 3e-13 seq20938 89.7 1e-12 seq2747 89.7 1e-12 seq126 89.7 1e-12 seq84 84.2 4e-11 >seq2462 Length=616574 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 176863 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 176804 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 176803 TCCCGGCAGAGA 176792 >seq557 Length=245217 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 151611 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 151552 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 151551 CCCCACGTTGGGC 151539 >seq20938 Length=81677 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 42864 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 42805 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 42804 CCCACGTTGGGC 42793 >seq2747 Length=434328 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| | |||||||||||||||||| ||||||||||||| ||||||||||| ||| Sbjct 237480 AGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCACGGTCGTGGGTTTGAG 237421 Query 142563 CCCCACATCGGGCA 142576 |||||||| ||||| Sbjct 237420 CCCCACATTGGGCA 237407 >seq126 Length=2161798 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||| |||||||| ||||||||||||| |||||||||||||||| Sbjct 743582 GCCCGGCTAGCTCAGTTGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 743641 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 743642 CCCACATTGGGC 743653 >seq84 Length=2061995 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 || || |||||||||||||||||| ||||||||||||| |||||||||||| |||| Sbjct 904606 CCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCAAGCC 904665 Query 142565 CCACATCGGGC 142575 |||||| |||| Sbjct 904666 CCACATTGGGC 904676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1024805233259882