Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9896 109 1e-18 seq465 109 1e-18 seq453 86.0 1e-11 seq188481 84.2 4e-11 >seq9896 Length=44520 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||||||||| |||||||| || ||||| | |||| ||||| || | || ||| ||| Sbjct 13978 GTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCGCCATCCTCCAGCTACTTGCCG 14037 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || ||||| || || || ||||| ||||| ||||||||||||||||| ||||| Sbjct 14038 GCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTT 14090 >seq465 Length=581878 Score = 109 bits (120), Expect = 1e-18 Identities = 133/180 (74%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||| ||| ||||| ||||| || | |||||||| Sbjct 115003 ACCAGGTGCAGGGTGGACTCTTTCTGGACGTTGTAATCAGAGAGAGTGCAGCCATCTTCC 114944 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTC-CTTGTCTTG 68371 | |||||| || || || ||||||| || ||| | | |||||| || || || || Sbjct 114943 AGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGGAGCCGGAAATGCCCTCTTTTATCCTG 114884 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| |||||||| |||||||||||| | || | |||| ||||||||| || Sbjct 114883 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCATCTCCAGGGTGATGGTCTT 114824 >seq453 Length=5298124 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| || || ||||||||||| |||||||| || | | || || |||||||| Sbjct 4821615 ACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTATTTAAAAAGAGTGTGGCCATCTTCC 4821674 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAA-TGCCTTCCTTGTCTTG 68371 | |||| | | | || |||||| || |||| || ||| |||| || ||||| || Sbjct 4821675 AGCTGCCTGTCCTCCAAGATGAGTTGCTGCTGGTGTGGGGGAGGTGCCCTCTTTGTCCTG 4821734 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| | |||||| |||||||||||| | || || | || ||||||||| | Sbjct 4821735 GATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTTCAGGGTGATGGTCCT 4821794 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTG 68458 | | |||||||| ||||| || || Sbjct 4821795 GCTGCTCAGGGTCTTCACGAAGATATG 4821821 >seq188481 Length=381 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 ||||| || |||||||| | ||||| || |||||||||||| | ||||||||||||| Sbjct 365 TGGTCAGGGGGAATGCCCTTTTTGTCCTGGATCTTTGCCTTGGCATTCTCGATGGTGTCT 306 Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || |||| ||||||| | || || || ||||||| | || || ||||| Sbjct 305 TTTGGCTCAACCTCCAGGGTGATGTTCTTGCCTGTCAGGGTCTGCATAAAGATTTGCAT 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918970408503440