Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2307 111 3e-19 seq6322 86.0 1e-11 >seq2307 Length=4779897 Score = 111 bits (122), Expect = 3e-19 Identities = 101/125 (81%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | ||||| || ||| | |||||||| || | || || | ||||||| Sbjct 580410 TGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCTGCTATCTTCT 580469 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| || |||||||||||||| |||||||| ||||||||||||||| Sbjct 580470 GGCTGAAGAAGAGAGGCCTC-ATGCCCGGACTCACTTTCTCGAATGAACTCATCAGCAGG 580528 Query 42825 GACGA 42829 || || Sbjct 580529 GATGA 580533 >seq6322 Length=173588 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || ||||| ||||| || | || |||||||| |||||||| || Sbjct 119587 CTCTTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGAAGGCTGACTGGGCCCTGTGT 119646 Query 42669 TGGATCGAGAGTCCC-GACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 ||||| ||| | || || || | || || | | || ||||| | || || || Sbjct 119647 TGGATTTGGAGACAAAGAGGCTACCTATGGAGAACGAGTTGTGACCTTTGCTGCTGTAGA 119706 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGAT 42787 || ||||||||||| ||| | || || || || |||||||||||| | ||| ||| Sbjct 119707 AGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGGCTCAAGAAACAGGGACTGAT 119766 Query 42788 GCCCGGACTCACCTTCTCGAACGAACT 42814 ||| || || || || || ||||| || Sbjct 119767 GCCTGGCCTTACATTTTCCAACGAGCT 119793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941621840343520