Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq26544 91.5 3e-13 >seq26544 Length=151321 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||||| |||||| || | ||||||||| | ||| ||| | || ||||||||| Sbjct 103717 CCATCTTCTACTTGTTTACCAGGGAAGATCAGCCTCTGATGATTAGGAGGAATTCCTTCT 103658 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 |||||||| || || || | | |||||||||| || | ||| | || || ||| Sbjct 103657 TTATCCTGAATCTTGGCCCTTATATTTTCTATAGTGTCTGAGGGTTCAATCTCAAGTGTG 103598 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| | || |||||||| || | |||||| Sbjct 103597 ATAGTTTTCCCCCTAAGGGTCTTGACAAAAACCTGCAT 103560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176175052846956