Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq427 96.9 4e-15 seq6768 93.3 5e-14 seq458 91.5 2e-13 seq2592 89.7 6e-13 seq2360 89.7 6e-13 seq6256 84.2 2e-11 seq2352 84.2 2e-11 seq955 84.2 2e-11 seq630 84.2 2e-11 >seq427 Length=2250747 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 748522 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 748581 Query 57065 TATACTACCGAGGATTGA 57082 ||||||| |||||| ||| Sbjct 748582 TATACTAACGAGGAGTGA 748599 >seq6768 Length=181965 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 68665 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 68606 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 68605 ATACTAACGAGGAT 68592 >seq458 Length=2134099 Score = 91.5 bits (100), Expect = 2e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 1500504 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGAT 1500563 >seq2592 Length=5982234 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 4852060 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACAAGGA 4852118 >seq2360 Length=223721 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 157314 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 157373 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 157374 TACTAACGAGGA 157385 >seq6256 Length=967024 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||||||||||||| | |||||| Sbjct 337094 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACAAACGAGGA 337036 >seq2352 Length=313243 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 |||||||| | | | || ||||||| ||||||||||||||||||||| ||||||||| Sbjct 309917 TTTTCTCCCCATCGGGGAAACGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 309858 Query 57063 ACTATACTACCGAGGA 57078 ||||||| | |||||| Sbjct 309857 ACTATACAAACGAGGA 309842 >seq955 Length=1667415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||||||||||||| ||| |||||||||||| | |||||| Sbjct 1344548 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATATTCACCACTATACAAACGAGGA 1344490 >seq630 Length=1336326 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| |||||| ||||||||||||| ||||||||||| Sbjct 764765 TTCTCCCCGTCGGGGAATCGAACCCCCGTCTCCAGCGTGACAGGCGGGTATACTCACCAC 764824 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 764825 TATACTAACGAGGA 764838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541649691587680