Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq5500 172 8e-38 >seq5500 Length=354892 Score = 172 bits (190), Expect = 8e-38 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| ||| ||||| |||||||||| || || || | || Sbjct 128530 AAGGGACAGCCCTTCACATTATTACAGATGAGCGACTGAATGGAGGCAGTGTTGATAATC 128471 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || ||||||||| ||| || |||||| Sbjct 128470 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGCGGAGAACAGATGGGA 128411 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| || ||| Sbjct 128410 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 128351 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| || ||||| || | | | ||| || || || | || || | | Sbjct 128350 ATAGCATCTGGACGTGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCAATG 128291 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||||||||||||||||| ||||| || |||||||| ||| Sbjct 128290 TCACTGTAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCT 128246 Score = 163 bits (180), Expect = 4e-35 Identities = 213/293 (73%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || |||||||| ||||| || ||||| || |||| | |||||||| ||||| Sbjct 127475 CCGGCCAGCGATCTGTCTGGTGAATGACTCAACAAAGTGGGTGAGTCCGTGCTCAATGAG 127416 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | ||| || | ||| | |||| | ||| | ||| |||| Sbjct 127415 GATGGAGTTGTTGTAGAGGAACTGCTTGTAGCTGTACTCCTGGTCTTCGATGTGAAAGCT 127356 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| ||| | |||||| | ||||| || ||||| ||||| || || |||||||| Sbjct 127355 GTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCGGCTGCGATGCGGTTCTG 127296 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| || | ||| ||| || | ||||||||| || | || | ||||||||| Sbjct 127295 ATACTGGAACTGCTGGT--TGAATAGCAGCTCCGGGTCGAACTTGAGTTTGAAGTGGTAG 127238 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 || || || ||||| || || | | ||| | ||| || || || ||||| || Sbjct 127237 CCACTCAGGTGCTGCACGTAGTCTTCGATCACAATCTTGATAGTCTCCCCTGT 127185 Score = 134 bits (148), Expect = 2e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 9761 CCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATA 9820 |||| || || || || ||||| || ||||| || || |||||||| || | |||||| | Sbjct 126971 CCCACTCAGGATGCTCCTGTTTAAGCACATCACACACTCTGTTGTGCTCCCGCAGCCAGA 126912 Query 9821 TGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGC 9880 ||||||| |||||||| | ||| ||||| | |||||| || || | ||||||||||| | Sbjct 126911 TGGTGGCATACATCATCAGACCAGGCACCAGACCAAAGACCTCCTGGCCCACTGCAAACC 126852 Query 9881 GCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGG 9940 | |||| || || | || | || | ||| | |||||||| |||||||| |||| Sbjct 126851 GTAGATGCTCAGGGGTGTGAGGGGGGTAGATCATCTCTACCTGGGTGTCTTTGACCGTGG 126792 Query 9941 GGGGATACATTTCACCGTCAATAACCT 9967 | ||||||| || || |||| |||| Sbjct 126791 GAGGATACACCTCGCCACCAATGACCT 126765 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| ||||| | ||||||||| | ||| ||| | || Sbjct 125485 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAA 125426 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || |||||||||| || | ||| || ||||| Sbjct 125425 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCGAACATCATATTCGAGCCTTGAGGATC 125366 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | |||| | || ||||||||||| || | | |||| || || || Sbjct 125365 AGGGATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAACTTCTTTTGAGTCAGGAAG 125309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721645454586800