Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq12441 114 2e-20 >seq12441 Length=306159 Score = 114 bits (126), Expect = 2e-20 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | |||||| | ||||||| |||||| || || |||| Sbjct 72775 CCTGCTTCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGT 72834 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||| | ||| |||||||| |||||||||| |||| | || |||||||| |||| | Sbjct 72835 GGATGTTTAAAGATTGGCTTTGATCGATGAAAG-CGCCTCTCTCGGCGGCCATCTTGAGA 72893 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | |||||||| || ||||||||||||||||| Sbjct 72894 ACAGTCTTCTGAGAGATCTCCCACACCGTCTT 72925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792867121033120