Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq465 104 5e-17 >seq465 Length=581878 Score = 104 bits (114), Expect = 5e-17 Identities = 136/185 (74%), Gaps = 5/185 (3%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || ||||||||||| |||| | ||| | |||||| Sbjct 115006 AGGACCAGGTGCAGGGTGGACTCTTTCTGGACGTTGTAATCAGAGAGAGTGCAGCCATCT 114947 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGG--TCCGGAAAAATTCCTTC-TCGC 199534 ||||||||||| || || |||||||| ||||||||| |||| |||| || || | Sbjct 114946 TCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGGAGCCGG--AAATGCCCTCTTTTA 114889 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||| ||||| ||| || |||| |||||| | | || | |||| ||||| Sbjct 114888 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCATCTCCAGGGTGATG 114829 Query 199595 GTCTT 199599 ||||| Sbjct 114828 GTCTT 114824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175444414213534