Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4104 91.5 6e-13 seq7865 86.0 2e-11 >seq4104 Length=609041 Score = 91.5 bits (100), Expect = 6e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 127419 ATATGCTTCCGAAATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTT 127478 |||||| || | | ||||||||||||| | || ||||||| ||| || | | |||| || Sbjct 384566 ATATGCCTCGGCGACTTCTTTAAATTTTCGCTCTGCTTCTTCTTTATTTTCTGGATTTTT 384507 Query 127479 ATCAGGATGATGTTTAACAGCTAATTTACGGTAAGCTTTTTTAATTTC 127526 ||||||||| ||||| || | ||||||||||||| ||||||| || Sbjct 384506 ATCAGGATGCCATTTAAGTGCCACTTTACGGTAAGCTCTTTTAATGTC 384459 >seq7865 Length=95967 Score = 86.0 bits (94), Expect = 2e-11 Identities = 88/113 (78%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGAA 451252 ||||| || |||||||| || | ||||| |||| || || ||||| || || ||| Sbjct 8019 AAGCCATACATTCAAGTTGATATTGGAGGTGGGCAAACCAAGACATTTGCCCCAGAGGAA 8078 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGG 451305 ||||| | |||||||||||||| |||||||||||||| ||| |||| |||| Sbjct 8079 ATTTCTGCCATGGTTCTTACTAAGATGAAAGAAACAGCTGAAGCATAT-TTGG 8130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1969891091433816