Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq66411 100 2e-15 seq3237 95.1 9e-14 seq3913 86.0 5e-11 >seq66411 Length=823 Score = 100 bits (110), Expect = 2e-15 Identities = 184/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | | ||| || ||||| | |||||| |||||||||||||||| | || | Sbjct 484 GTCATGACTCTACCAGCAGTTTCAATACCAAGGGAAAGAGGAGTGACATTCAAGAGCAGC 543 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || |||| || ||| | | ||| ||||| |||| || | ||| |||||| Sbjct 544 AAATCCTGAACATTCTCAGACTTGTCTCCAGATAGAATGGCTGTCTGGACAGCTGCACCA 603 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 || |||||||||||||||||||| | | | | || || | ||| ||||||| || | Sbjct 604 TAAGCAACAGCTTCATCAGGATTGATACTCTTGTTCAGCTCTTTTTCATTGAAGAAGTCC 663 Query 517676 GAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 ||||| | ||| | ||| || || | | || || || || | ||||| ||||| Sbjct 664 TGCAGAAGCT-TCTGAATCTTGGGGATTCTGGTAGAACCACCCACCAGGACAATATCATG 722 Query 517735 CACCTGTGATTTATCCAGTTTTGAATC 517761 ||||| || || || ||||| | ||| Sbjct 723 GACCTGAGACTTGTCTAGTTTGGCATC 749 >seq3237 Length=268031 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || ||||| || || ||||| ||||||||| | || || | ||||| Sbjct 24250 TGTTGTAGCTACTATAGCTTTCGGAATGGGCATTAATAAAGCCGACATTCGCAAAGTTAT 24191 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| ||||| ||| | || ||| ||||| || ||||| |||||||| || || Sbjct 24190 TCATTATGGCGCTCCTAAGGAAATGGAATCCTATTACCAGGAAATCGGTAGAGCTGGCCG 24131 Query 367113 TGATGGA 367119 |||||| Sbjct 24130 GGATGGA 24124 >seq3913 Length=711185 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 635439 AATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTA 635498 ||||||| || || |||| |||||||| ||||| ||||| | || | || |||||| Sbjct 366194 AATGTACACTTATCCTGACTGAGGGAGACTCAGCCAAAACTCTGGCAGTTTCAGGTCTTG 366135 Query 635499 ATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTA 635558 ||| |||||||||| | ||||| || || || |||||||||||| | | ||||| Sbjct 366134 GTGTAGTTGGAAGAGACAAATATGGGGTATTTCCTCTTAGAGGAAAAATACTCAATGTGC 366075 Query 635559 GGGATGCTAGTCCTAAA 635575 | || ||| || |||| Sbjct 366074 GAGAAGCTTCTCATAAA 366058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3769399018474612