Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1706 98.7 1e-15 >seq1706 Length=904449 Score = 98.7 bits (108), Expect = 1e-15 Identities = 197/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | || ||| || || || || || ||||| || | ||| ||||| | | | Sbjct 394961 GTCATCACGCCGCCCGCCGTCTCCAGGCCCAGCGACAGCGGCGCCACATCCAACAAAAGC 394902 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | ||||| || ||| |||||| |||| || || || ||||| | |||||| Sbjct 394901 AAATCTTGTACTTTTTCAGATTTGTCACCCATTAAAATAGCTGCCTGGACTGCAGCCCCG 394842 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || |||||||||||||| || || |||| || || || || ||||| || || Sbjct 394841 TAGGCCACCGCCTCATCGGGATTGATGCTTTTGTTGAGATCCCGCCCATTAAAGTAGTCT 394782 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | || | || | || ||||| || ||||| || || || | ||| || |||| Sbjct 394781 TGAAGCAGCTTCTGCACCTTGGGGATGCGCGTCGAGCCGCCCACGAGAACAATGTCATGG 394722 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA 7217 | ||| | || || ||||| | ||||||||| | || || ||||| |||| Sbjct 394721 ATTTTAGCCTTGTCCATCTTGGCGTCTCGAAGAGACTTCTCCACAGGCTCCA 394670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633305189489680