Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq4259 82.4 6e-11 >seq4259 Length=220411 Score = 82.4 bits (90), Expect = 6e-11 Identities = 164/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || |||||| | ||||| | | ||| || | | |||| Sbjct 135498 CCTCATGCTGCACATGGCATGTATATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCTG 135439 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| |||| | | ||| | | | Sbjct 135438 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCCATCAACTCCATGTCCTGGG 135379 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | | | ||||| || | ||| || |||| ||||||||| || | Sbjct 135378 TCAGGTCCTCCCCATCTCTTTGCCAGGTCAGGGTGATCTCCGAAGGATAGAAACCCAGAG 135319 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGTG 588 |||| || | || || || | | ||| || | | || ||||||||| ||| || Sbjct 135318 CCCAGCACCTCAGGGTGACATCCCCTTCAAGTCTGGGGTGATGGGTCACGTGTGCCTTTG 135259 Query 589 GAG 591 ||| Sbjct 135258 GAG 135256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396631285676112