Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq465 104 5e-17 seq453 87.8 4e-12 >seq465 Length=581878 Score = 104 bits (114), Expect = 5e-17 Identities = 116/152 (76%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || | |||||||| | ||||| | |||||||| Sbjct 115003 ACCAGGTGCAGGGTGGACTCTTTCTGGACGTTGTAATCAGAGAGAGTGCAGCCATCTTCC 114944 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGG--TCTGGAGGAATGCCTTC-TTTGTCT 195048 |||||||| ||||| ||||| ||||| || ||| | ||| |||||| || ||| || Sbjct 114943 AGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGGAGCCGGA--AATGCCCTCTTTTATCC 114886 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || || |||||| ||||| |||||||| Sbjct 114885 TGGATCTTGGCCTTGACATTCTCGATGGTGTC 114854 >seq453 Length=5298124 Score = 87.8 bits (96), Expect = 4e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||| || ||||||||||| || || ||||| | |||||| |||||||| Sbjct 4821615 ACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTATTTAAAAAGAGTGTGGCCATCTTCC 4821674 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA-ATGCCTTCTTTGTCTTG 195050 |||||| | | | ||||| ||| | || |||| ||| ||| |||| |||||||| || Sbjct 4821675 AGCTGCCTGTCCTCCAAGATGAGTTGCTGCTGGTGTGGGGGAGGTGCCCTCTTTGTCCTG 4821734 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || |||||| ||||| |||||||| Sbjct 4821735 GATCTTGGTCTTGACATTCTCGATGGTGTC 4821764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106209224932934