Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq308 91.5 2e-13 >seq308 Length=1444184 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 |||||| || | | || | ||| |||| || |||| | |||| ||| ||| ||||| Sbjct 972705 ACTGAATAAATTAGAAGTTATCAACCACACTCGCCTGTTTGAGAACGGGAGCTGTGAGAT 972646 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| ||||||||| |||| ||| | || ||| | | ||| | | ||| |||||| Sbjct 972645 CCACCTGACCTGTACTGTGGAGAACCCAAATCATACTGCCTCAATTGAGTGGCAGGCCTC 972586 Query 2327 GGGCAAGA-CGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385 || || | | ||| || | || || || |||| |||||||||||| | ||| | Sbjct 972585 AGGAAACATCTCTT-TAGGGGACCCAAATATCACTGTCTCCTGGGACCCAAAGAATTCCC 972527 Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445 |||| |||| ||||| ||| || ||| |||| ||||| | ||| || | |||| Sbjct 972526 GTGACCAGAGTTACACCTGCCATGCTCTGAACCCTGTCAGCAAGGTGTCTGTCTCTGTCT 972467 Query 2446 CGGCCCAGA 2454 | ||||||| Sbjct 972466 CTGCCCAGA 972458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627472421859920