Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq26544 82.4 6e-11 >seq26544 Length=151321 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 |||| || ||||| || || ||| | |||| || | ||| ||||| | || ||| Sbjct 103747 TTTTAAATGTTGTAGTCAAAGAAAGTAAGGCCATCTTCTACTTGTTTACCAGGGAAGATC 103688 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 | | ||| |||| || ||||| ||||||||||| ||||| || ||| | ||||| Sbjct 103687 AGCCTCTGATGATTAGGAGGAATTCCTTCTTTATCCTGAATCTTGGCCCTTATATTTTCT 103628 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | |||||| || | ||| | ||||| |||| ||||| || | | || || ||||| Sbjct 103627 ATAGTGTCTGAGGGTTCAATCTCAAGTGTGATAGTTTTCCCCCTAAGGGTCTTGACAAAA 103568 Query 101462 ATCTGCAT 101469 | |||||| Sbjct 103567 ACCTGCAT 103560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395166606522114