Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3855 179 7e-40 seq794 136 7e-27 seq6322 96.9 6e-15 seq2307 84.2 4e-11 seq1093 84.2 4e-11 >seq3855 Length=318543 Score = 179 bits (198), Expect = 7e-40 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | || | ||| || ||||| ||| ||||| |||||||| || |||| Sbjct 195142 GCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGCTTGAGCTGGGCCACTTGCTCCC 195083 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || | | ||| ||| | ||||| || ||||| |||| ||| ||| |||||| || | Sbjct 195082 GTAGGAGGCCCGCAGTACTCGACAGCCCCGCGTTCTCAGCCTTCAGCGTCTTCACCTTGT 195023 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 ||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| | || Sbjct 195022 CCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGCCTGT 194963 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || ||| Sbjct 194962 TCCGCAGCCGCTTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGGGAC 194904 >seq794 Length=844335 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 673883 AGGACTTTCTGTTTGAGCTGTGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAGC 673942 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||| || |||||||||||||| |||| ||| || ||||| Sbjct 673943 TCGGTGTTCTGGCTTTTGAGGGTTTTGACTTTCTCCTCCAGGCGCGAGATACGCTCCAGC 674002 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || ||||| || ||||||||| Sbjct 674003 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCTCTTGCGCTCCGCCTTG 674062 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || |||||||| ||||||||||| || ||| Sbjct 674063 ATACGTTCCTGCGTGTCCATGTCGATGGGCGAC 674095 >seq6322 Length=173588 Score = 96.9 bits (106), Expect = 6e-15 Identities = 150/210 (71%), Gaps = 7/210 (3%) Strand=Plus/Minus Query 48170 AGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCC 48229 ||| ||||||| || || |||||||| | ||| | ||||||||||| |||| Sbjct 119793 AGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGAT 119734 Query 48230 GCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGA-GCCTC--TCT 48286 || |||||||||||||||||||| || || || || || || ||| | ||| ||| Sbjct 119733 GCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAA---GGTCACAACTCGTTCT 119677 Query 48287 CCGAAAGAAGCGTTCTTGTCT-GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGAT 48345 || | | ||| | |||||| | ||||| | || |||||||| |||||||| || | Sbjct 119676 CCATAGGTAGCCTCTTTGTCTCCAAATCCAACACAGGGCCCAGTCAGCCTTCTTTTTCAC 119617 Query 48346 GCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 || ||||| ||||| || || |||||| Sbjct 119616 ACAAGGCATTGTCTCAATAGCATTGAAGAG 119587 >seq2307 Length=4779897 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 |||| |||| ||||||||| | || ||||| ||| || ||||||| || |||| | Sbjct 580535 CTTCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 580476 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 | |||||||| || || || || || ||||||||||| | ||| ||||| || || || | Sbjct 580475 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 580416 Query 48273 C 48273 | Sbjct 580415 C 580415 >seq1093 Length=1386444 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | ||| || ||| ||||||| || || |||||||| | |||| | ||| Sbjct 281503 TCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 281562 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| |||| ||| |||||||||||||||||||| || |||| || || || || Sbjct 281563 AGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCAAAGCAGCAAAGGC 281621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928852291079680