Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1093 96.9 6e-15 seq2307 93.3 8e-14 >seq1093 Length=1386444 Score = 96.9 bits (106), Expect = 6e-15 Identities = 100/126 (79%), Gaps = 4/126 (3%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || |||||||||||| |||| || ||||| ||| || || |||||| | || |||||| Sbjct 281624 GTGGCCTTTGCTGCTTTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCGTCAATATTCTGG 281565 Query 25945 CTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 |||||| | | |||||| ||||| || || ||| |||||||||||||| || ||||| | Sbjct 281564 CTCAAGAA-ACGGGGACTGATGCCTGGCCT-TACATTTTCCAACGAGCTTATTAGCAGAG 281507 Query 26003 ACGAGG 26008 | |||| Sbjct 281506 ATGAGG 281501 >seq2307 Length=4779897 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| ||||| ||| | || ||| || || ||||| || ||||||| Sbjct 580410 TGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCTGCTATCTTCT 580469 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| || ||||||||| || ||||| || || || |||||||||||| Sbjct 580470 GGCTGAAGAAGAGAGGCCTCATGCCCGGACT-CACTTTCTCGAATGAACTCATCAGCAGG 580528 Query 26002 GACGA 26006 || || Sbjct 580529 GATGA 580533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926172025866880