Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq76 165 1e-35 >seq76 Length=1782596 Score = 165 bits (182), Expect = 1e-35 Identities = 224/310 (72%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 153702 AGTTGAAGTGGTAACACAGGATGTAAATTCATCA-CTTCGATCGCCCGCGTCCCTCAGAT 153760 ||| |||||||| |||||||||| | | | | || | |||| || ||| | |||| Sbjct 1691348 AGTGGAAGTGGTGACACAGGATG-AGAGAAAGCTGCTGCACACGCCTGCATCCTTAAGAT 1691406 Query 153761 GCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAG 153820 | || ||||| | || ||||| || ||||| || ||||| || |||||||||||| Sbjct 1691407 GTTCTCTGAAACTCCCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCTGTAA 1691466 Query 153821 GTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATA 153880 | |||||||| |||| ||| || ||||||||||| || || || | ||||| |||||| Sbjct 1691467 GCCCAGAAAACATGGTCACTTACAGCAAAGCCCATGGAGTTGTAGTCCAGCCTGCATATA 1691526 Query 153881 AAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATG 153940 ||| || | || || || || | || || | |||| || || || || ||||| Sbjct 1691527 GAGACAGGGTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACA 1691586 Query 153941 CAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGG 154000 |||| ||||| ||||| ||||| || |||||||| || |||| || | |||||| ||| Sbjct 1691587 CAACCCTGGACGATGAGGGCTGCTACATGTGTCTCTTCAATACTTTTGTTTCTGGGAAGA 1691646 Query 154001 TATCGGGAAC 154010 | || || || Sbjct 1691647 TCTCAGGGAC 1691656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 647430825319520