Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq66411 140 2e-27 seq103940 91.5 1e-12 >seq66411 Length=823 Score = 140 bits (154), Expect = 2e-27 Identities = 348/519 (67%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 475668 GAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAA 475727 ||||| | ||||| ||||| || || |||||||| ||||| || || || ||||| || | Sbjct 751 GAGATGCCAAACTAGACAAGTCTCAGGTCCATGATATTGTCCTGGTGGGTGGTTCTACCA 692 Query 475728 GAATTCCAAAAATAAGAGAAATGCTTT--CATCATATTTT-AATGGTAAAAAGTTAAATG 475784 |||| || || || |||| |||| || | | || |||| ||| || | || Sbjct 691 GAATCCCCAAGATTC-AGAA--GCTTCTGCAGGACTTCTTCAATGAAAAAGAGCTGAACA 635 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTAT 475844 | ||| | |||||||||||||||||||| ||||| || |||||||| |||| ||| ||| Sbjct 634 AGAGTATCAATCCTGATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGACAGCCATTCTAT 575 Query 475845 CAGGTCAATCAGAC-GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCA 475903 | || | || | ||||| | | || | | || | | || ||||| ||||| Sbjct 574 CTGG-AGACAAGTCTGAGAATGTTCAGGATTTGCTGCTCTTGAATGTCACTCCTCTTTCC 516 Query 475904 TTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATC 475963 | ||| ||||||| | ||| | | |||||| || || | ||||| | ||| Sbjct 515 CTTGGTATTGAAACTGCTGGTAGAGTCATGACTGTCCTCATCATGCGCAATACCACCATC 456 Query 475964 CCATGCAA-AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCAT 476022 || ||| | | | | | | || |||| || |||||||| || ||| ||| Sbjct 455 CCTACCAAGCAGACCCAGACT-TTCACCACCTACTCTGATAACCAGCAGGGTGTGCTCAT 397 Query 476023 CCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAA 476082 || || | |||| ||||| | | | ||||| ||| ||||||| | | | Sbjct 396 TCACATATATGAAAGTGAACG-------AGCCATGATAACAACCTGCTTGGAAAGTATGA 344 Query 476083 TCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATAT 476142 ||| |||| | ||||| || || | || ||||| || |||||||| |||||||| || Sbjct 343 ACTTACAGGTCTCCCTCCAGCACCATGTGGTGTTCCCCAGATTGAAGTCACTTTTGACAT 284 Query 476143 TGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 |||||| |||| || || |||||| || || ||||| Sbjct 283 TGATGCCCATGGCATCCTCAATGTTTCTTCTGTAGATAA 245 >seq103940 Length=1148 Score = 91.5 bits (100), Expect = 1e-12 Identities = 120/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||||||||| | || || || ||| ||||| ||| | || || | || Sbjct 83 TGCAGCTGGTATTGATCTTGGCACCACCTACTCCTGTGTGAGTGTCTTCCAGCATAGGAA 142 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || |||||||||||||||| |||||| |||| |||||| |||||| ||||||| Sbjct 143 GGTGGAGATAATTGCCAATGACC-AGGTAACTGAACCACACCAAGCTATGTTGCTTTTAC 201 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 ||| | |||| | ||||| |||||| | || |||| | ||| Sbjct 202 TGACATGAAACAATTGATTGGGGATGCTCCGAAGAATCAGGTTGC 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3258304719279896