Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1997 356 3e-93 seq98 113 5e-20 >seq1997 Length=3328139 Score = 356 bits (394), Expect = 3e-93 Identities = 596/862 (69%), Gaps = 0/862 (0%) Strand=Plus/Plus Query 160171 CGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTT 160230 |||| || | || || ||| |||| || ||||| |||| ||||| | || ||||||| Sbjct 1508708 CGGAGCGCACATGGACTCCGCTGCACGGTGGGTAAGGAGCGCCTTTGGAAACATCACCTT 1508767 Query 160231 CGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGT 160290 | ||||||||||||| |||||||| || | || | ||||||||| ||| || || | Sbjct 1508768 CAAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTCGGACAAGTCATACTTAT 1508827 Query 160291 ACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 || ||| | | ||| || || | || || | || | ||||||||| |||| | Sbjct 1508828 GGCTCGAGGGGAGAGAACCAGGGACTTCAGGGATCCTTTGGATGGTGGCCCAGAGGTACT 1508887 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410 | || ||||| |||||||||| | ||| |||||||||| | ||| || | | Sbjct 1508888 CATCTGGGCTATACGTGTCCTGTGCCCACTCCATGAACTTTTGGATGTCCCCATTTTCTA 1508947 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | || | || || || | || |||||||| |||||||| ||||| | || Sbjct 1508948 GCACATAGCCTACATATTCCCTACTGACCACAAAGTAGGCGCTGCCTGAGAAAAGAGGAG 1509007 Query 160471 TGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | | | |||||| | ||||| || || ||||| | || | || | || | | Sbjct 1509008 TTGTGAGGGGCGGCTGGGCTTTGGCCACCCCAGTGTTCGTCAGCTTCCCGTCGACAACGG 1509067 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 |||||||||||||||||| || ||||| || ||||| || || || || ||| Sbjct 1509068 TGTGTCGCTTCTTCCACCTTTCCTCCTTGTTTGGAGGCATCTTCTCGGTTTCCAGGTTGT 1509127 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | | || || || || || | | |||| || || ||||| || || | || |||| Sbjct 1509128 TTTCGCCCAGGAATGACTTGAGTTTCCTGACCATTTCCAGGTTGGTTTTAATAGGGAAGT 1509187 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | |||| || | ||| |||| ||||||||| || | |||| | | | ||||||||||| Sbjct 1509188 CCATACCACAGAGGTTGATCAAGTACTTCCAGTTTGTACTCATGGCATACAGGTCCCTCA 1509247 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 |||| || | || ||||| || || |||||||| || || || ||| |||| || | | Sbjct 1509248 TGCAGTTGAGGTCAGCCTGAACCCGACTCCAGGATGCATAAACAACGCTCTCCAGCTGGC 1509307 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCT 160830 ||||||||||||| || | || || ||| | || |||| |||||| ||||| || Sbjct 1509308 TGGCCACAAAGACATTCTTCAAGCAGGACGCAATGCCCATCACCGCGGCTAAGAAGGGCT 1509367 Query 160831 TATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGA 160890 || || ||| ||||||||| | |||||| | ||||||||| ||||||||||| | Sbjct 1509368 CCTCTGCTTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGATGGCCCTCA 1509427 Query 160891 GCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACT 160950 | | |||||| | ||| || ||||| ||||| | ||| || ||||| || || ||||| | Sbjct 1509428 GGAGCCTCTCAAGCATTTCAATCTTGTGATGAACCACTATGGAGTATGCGATGGGAAAGT 1509487 Query 160951 CGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCAC 161010 | | |||||| ||| |||| | | | || || ||| || |||| ||| | ||| Sbjct 1509488 CTGCCTCCTCTTTACTAAGGGGCTCTACAATATATTTGCGCATCCTGATGAAAGAGGCAC 1509547 Query 161011 AATCCCGCGTCATGTTGATATA 161032 | || || |||||||| ||||| Sbjct 1509548 AGTCACGGGTCATGTTTATATA 1509569 >seq98 Length=1325513 Score = 113 bits (124), Expect = 5e-20 Identities = 552/863 (64%), Gaps = 23/863 (3%) Strand=Plus/Plus Query 160120 GGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTA 160179 ||||| |||||| || |||||||||| ||| || ||||| | | ||||| | || Sbjct 558589 GGTGATGGTTCTGAAGTATCCAGTGCAGGTCCCCAGACCCATAAATACAGACAGCCCGCT 558648 Query 160180 TGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACT 160239 ||| || || ||||| | ||| | || || | | | | ||| || |||| || || Sbjct 558649 GGTGGACTCCTGAACAAGGTGTGTAAGGTGCCCCATCCTCTATGTCTCCCTCGTGGTCCT 558708 Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299 ||||||| | ||| || || || |||||| ||| ||| ||||| || || Sbjct 558709 GCCACTTGGTTAGCCTTGCAATAGCTCTCATGTCTGAGAGGTCAAATTTGGGGTGCAAGG 558768 Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359 || | | || || | | || |||||| ||||||||||| ||||| || || || | Sbjct 558769 GAGCTGATCCAGGCATCCAGGAGGCACGCTGGAGGGTGGCCCAAAGGTGCTCATCAGGAC 558828 Query 160360 TGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAGAACGTGAG 160419 |||| ||||| || | |||||| || | | | | | ||| | ||| || Sbjct 558829 TGTAGGTGTCTTTTGCCCATTCGATTAGTTGTTGGGCTTTGGTGTTGTTTAAAACATGTT 558888 Query 160420 TAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTAT-A 160478 || | || || | | || | ||| || | || | || || | ||| | ||| | Sbjct 558889 CAATGAAGTCTCGAGAAGCCACCATGTAGGCATTCCCAGTAAACATGGTTAT-GTTATAA 558947 Query 160479 GGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCG 160537 ||||| | |||||| || || ||||| || ||| ||||||| | | | || Sbjct 558948 GGCGGAGGGGTCTTTCTCTTG-CCGGTATTGTACAATGTGTCTTTCAC---CTCATAGCG 559003 Query 160538 CTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGT---TCCGTCTCTAGACTGTT-GG 160593 | | ||| | | | | || || || || || || || | ||| | |||||| | Sbjct 559004 ATATTCCCAGCGAAACCTTTTATGTGGGGG--TG-GTACCTCTGACTCCATACTGTTCTG 559060 Query 160594 CACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGG 160653 | | || | | || || || ||| ||||| || ||||||| |||||||| | Sbjct 559061 CCCATTCAATAG-CTTGAGGGCCTGGACCATCTCAGCATTGGTCTTGATGGGAAAGTCTG 559119 Query 160654 TACCGCACAAGTTTATCACGTACTTCCATTTC---GCGCTCAGGTCGTGCAGGTCCCTCA 160710 | || || ||| | | ||| |||||| | | |||| || | | ||| || Sbjct 559120 TCCCACAGGTGTTCAGGAGGTATTTCCATGGCACGGAGCTCTGGAC---TAAGTCTTCCA 559176 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 |||| || | || |||||||| | | ||||||||| || || || | | || |||| Sbjct 559177 TGCAGTTCAGGTCAGCCTGCACCCTGGACCAGGAAGCATAGACCACTGACACCAGCTTAC 559236 Query 160771 TGGCCACAAAGACGTTATCGAAA-CACGACACGATTCCCACCACCGCCAGAAAGAACATC 160829 | || | |||||| || | |||| || ||||| || || |||||| | ||| | Sbjct 559237 TAGCTATAAAGACATT-TGGAAAGCATGACACAATGGCCCTGACCGCCTGCTTGAAAGTT 559295 Query 160830 TTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTG 160889 | | |||| | |||||||| || || || | ||| ||||| | ||| | || | Sbjct 559296 TCTGGGGACTTTTGATCCACGTGGACACAGTATATGTTTTGAGGGGTGTACACAGCGCGC 559355 Query 160890 AGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAAC 160949 |||| ||| || || |||| ||||| | ||| | ||| || || || || || ||||| Sbjct 559356 AGCAGCCTTTCAAAGTTCTCGATCTTCTCATGAACCACCATGGAATACGCGATGGGAAAG 559415 Query 160950 TCGGTCTCCTCGCGACTCAGGGA 160972 |||| ||| || |||||| || Sbjct 559416 TCGGCCTCTTCTTTACTCAGTGA 559438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575558237321520