Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq26544 93.3 8e-14 >seq26544 Length=151321 Score = 93.3 bits (102), Expect = 8e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||| |||||| || | || || | ||||| |||| |||||| ||||||||||| Sbjct 103715 ATCTTCTACTTGTTTACCAGGGAAGATCAGCCTCTGATGATTAGGAGGAATTCCTTCTTT 103656 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||||||| ||||| || || | |||| || || || || Sbjct 103655 ATCCTGAATCTTGGCCCTTATATTTTCTATAGTGTCTGAGGGTTCAATCTCAAGTGTGAT 103596 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||| || | || || || ||||| | ||||| || Sbjct 103595 AGTTTTCCCCCTAAGGGTCTTGACAAAAACCTGCATCTT 103557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897065621972640