Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq825 152 6e-31 seq2901 122 1e-21 seq6768 107 2e-17 >seq825 Length=2116948 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | ||| |||||||| ||||| | |||||| | || Sbjct 128594 GCTTGGCCAGTTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGA 128535 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | ||||||| ||| ||||||| || ||||||| |||| | Sbjct 128534 TGGTCGAGCGCTTGTTGTAATGCGCCAAGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 128475 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| ||| | ||| |||||||| |||||||| Sbjct 128474 TATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTAGACGAGATGCCAGTGTCGGGGT 128415 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 128414 GCACCTGCTTCAGCACCTTGTA 128393 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | ||| |||||||| ||||| | |||||| | || Sbjct 133130 GCTTGGCCAGTTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGA 133189 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | ||||||| ||| ||||||| || ||||||| |||| | Sbjct 133190 TGGTCGAGCGCTTGTTGTAATGCGCCAAGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 133249 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| ||| | ||| |||||||| |||||||| Sbjct 133250 TATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTAGACGAGATGCCAGTGTCGGGGT 133309 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 133310 GCACCTGCTTCAGCACCTTGTA 133331 >seq2901 Length=940433 Score = 122 bits (134), Expect = 1e-21 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| ||||| ||| | ||||||||| || ||||||||||| || | ||| || Sbjct 931075 GCCAGCTCGCCCGGCAGCAGCAGGCGCACAGCCGTCTGGATCTCCCGGGACGTGATGGTA 931016 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| | |||||||| || || ||| ||||||| |||| ||||| Sbjct 931015 GAGCGCTTGTTGTAATGCGCCAGGCGCGAAGCTTCGCCTGCGATGCGTTCGAAGATGTCA 930956 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 |||||||||||||| |||| ||| | |||| || ||||| ||||||||||||| Sbjct 930955 TTGACAAACGAGTTTATGATGCCCATGGCCTTGGACGAAATGCCGGTGTCGGGGTGCACC 930896 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| | ||| ||||| Sbjct 930895 TGCTTCAACACTTTGTA 930879 >seq6768 Length=181965 Score = 107 bits (118), Expect = 2e-17 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| ||||||||||| || | ||| || |||||||| | ||||| Sbjct 166241 CAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTAGAACGCTTGTTGTAATGCGC 166300 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 || ||| |||||| ||||||| |||| |||||||| || || |||||||||| Sbjct 166301 CAAGCGGGAAGCCTCGCCAGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCATGAT 166360 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | ||| || |||||| ||| || ||||| ||||| ||||||||||| Sbjct 166361 GCCCATGGCTTTGGACGAAATGCCCGTGTCCGGATGCACTTGCTTCAGCACCTTGTA 166417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6088247745844034