Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq825 201 2e-45 seq6768 170 3e-36 seq2901 170 3e-36 seq6322 91.5 2e-12 >seq825 Length=2116948 Score = 201 bits (222), Expect = 2e-45 Identities = 198/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || || ||| |||||||||| ||| ||| Sbjct 128633 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACAGCATGCTTGGCCAGTTCCCCGGGCA 128574 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||| | |||||||| ||| || ||||||||| Sbjct 128573 GCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGATGGTCGAGCGCTTGTTGTAAT 128514 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| |||| ||||||| || ||||||| |||| || |||||||| |||||||||| Sbjct 128513 GCGCCAAGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAATATCGTTGACGAACGAGTTCA 128454 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| |||||||||||||||||| |||||||||| Sbjct 128453 TGATGCCCATGGCCTTAGACGAGATGCCAGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 128394 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 128393 ACACATAGATGGAGTA 128378 Score = 159 bits (176), Expect = 5e-33 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 1485505 GCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTG 1485564 || ||| |||||||||| ||| ||| | ||| |||||||| ||||| | |||||||| Sbjct 133126 GCATGCTTGGCCAGTTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACCTCGCGGGAC 133185 Query 1485565 CCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCG 1485624 ||| || ||||||||| |||||| |||| ||||||| || ||||||| ||| Sbjct 133186 GTGATGGTCGAGCGCTTGTTGTAATGCGCCAAGCGGGAGGCCTCGCTGGCGATGCGCTCG 133245 Query 1485625 ATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCG 1485684 | || |||||||| |||||||||||||| ||| | || |||||||| |||| Sbjct 133246 AAAATATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTAGACGAGATGCCAGTGTCG 133305 Query 1485685 GGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGAGTA 1485725 |||||||||||||| ||||||||||| ||| || ||||| Sbjct 133306 GGGTGCACCTGCTTCAGCACCTTGTACACATAGATGGAGTA 133346 >seq6768 Length=181965 Score = 170 bits (188), Expect = 3e-36 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || |||||||| | |||| || || ||| Sbjct 166177 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGTTTAGCCAACTCCCCCGGCA 166236 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || |||||||| Sbjct 166237 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTAGAACGCTTGTTGTAAT 166296 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| |||| |||||| ||||||| |||| |||||||| || || ||||||| Sbjct 166297 GCGCCAAGCGGGAAGCCTCGCCAGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 166356 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| || |||||| ||| || ||||| ||||| |||||||||| Sbjct 166357 TGATGCCCATGGCTTTGGACGAAATGCCCGTGTCCGGATGCACTTGCTTCAGCACCTTGT 166416 Query 1485710 AAAC 1485713 | || Sbjct 166417 ACAC 166420 >seq2901 Length=940433 Score = 170 bits (188), Expect = 3e-36 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || |||||||| | ||||| ||||| ||| Sbjct 931119 TGTACTTGGTGACCGCCTTGGTGCCCTCCGACACGGCGTGTTTAGCCAGCTCGCCCGGCA 931060 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||||||||| |||| ||| || ||||||||| Sbjct 931059 GCAGCAGGCGCACAGCCGTCTGGATCTCCCGGGACGTGATGGTAGAGCGCTTGTTGTAAT 931000 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| || ||| ||||||| |||| ||||| |||||||||||||| | Sbjct 930999 GCGCCAGGCGCGAAGCTTCGCCTGCGATGCGTTCGAAGATGTCATTGACAAACGAGTTTA 930940 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| || ||||| |||||||||||||||||| | ||| |||| Sbjct 930939 TGATGCCCATGGCCTTGGACGAAATGCCGGTGTCGGGGTGCACCTGCTTCAACACTTTGT 930880 Query 1485710 AAAC 1485713 | || Sbjct 930879 ACAC 930876 >seq6322 Length=173588 Score = 91.5 bits (100), Expect = 2e-12 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 794027 GTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCAC 794086 ||| || |||||||| |||||||| | | |||| | |||||| ||||||||| ||| Sbjct 120075 GTCCGCCACGAATTCGATGTACTGCTTCCTTAGGGTGCAGTTCATCCCGATGAGCTTCAC 120016 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCT 794146 ||||| | ||| ||| |||||| | ||| ||| ||||| ||||||||||| | | | Sbjct 120015 AGGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCACGGCGTCGATGATGAT-TTCTT 119957 Query 794147 GGGCACGTCG-GACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGC 794205 | | | | | |||||||||| || || | || | | ||||||||||||| | | Sbjct 119956 GTACTCTTTGCTCCGACGGCTTGCATACCAGGTGCCTGAACATCAGGCAGGCAAAGCCAC 119897 Query 794206 AATG 794209 | || Sbjct 119896 AGTG 119893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7891758763308678