Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq66411 105 5e-17 seq3237 89.7 4e-12 >seq66411 Length=823 Score = 105 bits (116), Expect = 5e-17 Identities = 185/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | | |||||| ||||| | |||||| |||||||||||||||| | || | Sbjct 484 GTCATGACTCTACCAGCAGTTTCAATACCAAGGGAAAGAGGAGTGACATTCAAGAGCAGC 543 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || |||| || ||| | | ||| ||||| |||| || | ||| |||||| Sbjct 544 AAATCCTGAACATTCTCAGACTTGTCTCCAGATAGAATGGCTGTCTGGACAGCTGCACCA 603 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 || |||||||||||||||||||| | | | | || || | ||| ||||||| || | Sbjct 604 TAAGCAACAGCTTCATCAGGATTGATACTCTTGTTCAGCTCTTTTTCATTGAAGAAGTCC 663 Query 281843 GAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 ||||| | ||| | ||| || || | | || || || || | ||||| ||||| Sbjct 664 TGCAGAAGCT-TCTGAATCTTGGGGATTCTGGTAGAACCACCCACCAGGACAATATCATG 722 Query 281902 CACCTGTGATTTATCCAGTTTTGAATC 281928 ||||| || || || ||||| | ||| Sbjct 723 GACCTGAGACTTGTCTAGTTTGGCATC 749 >seq3237 Length=268031 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || ||||| || || ||||| ||||||||| | || || | ||||| Sbjct 24250 TGTTGTAGCTACTATAGCTTTCGGAATGGGCATTAATAAAGCCGACATTCGCAAAGTTAT 24191 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || ||||| ||| | || ||| ||||| || ||||| |||||||| || || Sbjct 24190 TCATTATGGCGCTCCTAAGGAAATGGAATCCTATTACCAGGAAATCGGTAGAGCTGGCCG 24131 Query 131296 TGATGGA 131302 |||||| Sbjct 24130 GGATGGA 24124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3729328454633652