Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1905 93.3 8e-14 >seq1905 Length=2355956 Score = 93.3 bits (102), Expect = 8e-14 Identities = 80/98 (82%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| || || |||||||||||||| || ||||| ||| | ||||| ||||||||| Sbjct 1405090 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTTTGCTGA-CAGGAGGAATTCCTTCC 1405032 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 ||||| || ||||| || || |||||||| || || || Sbjct 1405031 TTATCATGGATCTTGGCCTTGACATTTTCTATAGTGTC 1404994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978931336878478