Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq6768 104 3e-17 seq2360 104 3e-17 seq427 104 3e-17 seq458 98.7 1e-15 seq6256 96.9 5e-15 seq630 96.9 5e-15 seq2352 93.3 5e-14 seq2592 89.7 7e-13 seq499 87.8 2e-12 seq475 86.0 8e-12 >seq6768 Length=181965 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 68593 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 68652 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 68653 CCCGACGGGGAG 68664 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 68593 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 68652 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 68653 CCCGACGGGGAG 68664 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 68664 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 68605 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 68604 TACTAACGAGGAT 68592 >seq2360 Length=223721 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 157385 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 157326 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 157325 CCCGACGGGGAG 157314 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 157385 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 157326 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 157325 CCCGACGGGGAG 157314 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||| Sbjct 157313 ACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 157372 Query 139412 ATACTAACGAGGA 139424 ||||||||||||| Sbjct 157373 ATACTAACGAGGA 157385 >seq427 Length=2250747 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 748595 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 748536 Query 8718 CCCGACGAGGAGCAG 8732 ||||||| |||| || Sbjct 748535 CCCGACGGGGAGAAG 748521 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 748598 CACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 748539 Query 11786 TTCCCCGACGAGGAG 11800 |||||||||| |||| Sbjct 748538 TTCCCCGACGGGGAG 748524 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 748524 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 748583 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 748584 TACTAACGAGGA 748595 >seq458 Length=2134099 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1500562 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1500503 Query 8718 CCCGACGAGGAG 8729 ||| ||| |||| Sbjct 1500502 CCCAACGGGGAG 1500491 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1500562 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1500503 Query 11789 CCCGACGAGGAG 11800 ||| ||| |||| Sbjct 1500502 CCCAACGGGGAG 1500491 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||| ||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1500491 CTCCCCGTTGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1500550 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 1500551 TACTAACGAGGAT 1500563 >seq6256 Length=967024 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||||| |||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 337036 TCCTCGTTTGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 337095 Query 8718 CCCGACGAGGAGCAGA 8733 ||||| | ||||| || Sbjct 337096 CCCGATGGGGAGCCGA 337111 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||| |||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 337036 TCCTCGTTTGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 337095 Query 11789 CCCGACGAGGAG 11800 ||||| | |||| Sbjct 337096 CCCGATGGGGAG 337107 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| | ||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 337107 CTCCCCATCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 337048 Query 139413 TACTAACGAGGA 139424 ||| |||||||| Sbjct 337047 TACAAACGAGGA 337036 >seq630 Length=1336326 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | | |||||| ||||||||||| Sbjct 764839 TTCCTCGTTAGTATAGTGGTGAGTATACCCGCCTGTCACGCTGGAGACGGGGGTTCGATT 764780 Query 8717 CCCCGACGAGGAGCAG 8732 |||||||| |||| || Sbjct 764779 CCCCGACGGGGAGAAG 764764 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | | |||||| |||||||||||| Sbjct 764838 TCCTCGTTAGTATAGTGGTGAGTATACCCGCCTGTCACGCTGGAGACGGGGGTTCGATTC 764779 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 764778 CCCGACGGGGAG 764767 >seq2352 Length=313243 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713 || ||||||||| |||||||||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 309838 TTCTTCCTCGTTTGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 309897 Query 8714 ATTCCCCGACGAGGAG 8729 |||||||| | |||| Sbjct 309898 TTTCCCCGATGGGGAG 309913 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||| |||||||||| ||||| |||| ||||| | ||||||||||||||||| ||| Sbjct 309842 TCCTCGTTTGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGTTTC 309901 Query 11789 CCCGACGAGGAG 11800 ||||| | |||| Sbjct 309902 CCCGATGGGGAG 309913 >seq2592 Length=5982234 Score = 89.7 bits (98), Expect = 7e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||| |||||||||||||| ||||| |||| ||||| | ||||||||| |||||||||| Sbjct 4852119 TTCCTTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATT 4852060 Query 8717 CCCCGAC 8723 ||||||| Sbjct 4852059 CCCCGAC 4852053 Score = 84.2 bits (92), Expect = 3e-11 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||| |||||||||||||| ||||| |||| ||||| | ||||||||| ||||||||||| Sbjct 4852118 TCCTTGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTC 4852059 Query 11789 CCCGAC 11794 |||||| Sbjct 4852058 CCCGAC 4852053 >seq499 Length=1723870 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713 || ||||||||| |||||||||| ||||| |||| |||| | |||||||||||||||| Sbjct 55606 TTTTTCCTCGTTGGTATAGTGGTGAGTATCCCCGCCTGTAACGTGGGAGACCGGGGTTCG 55665 Query 8714 ATTCCCCGACGAGGAGCA 8731 |||||| ||| |||||| Sbjct 55666 GTTCCCCAACGGGGAGCA 55683 >seq475 Length=1681015 Score = 86.0 bits (94), Expect = 8e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 8669 ATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCGACGAGGA 8728 |||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 748139 ATAGTGGTGAGTATCCCCGCCTGTCACACGGGAGACCGGGGTTCGATTCCCCGACAGGGA 748198 Query 8729 GC 8730 || Sbjct 748199 GC 748200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 650966222766880