Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1997 233 2e-56 seq76 93.3 5e-14 >seq1997 Length=3328139 Score = 233 bits (258), Expect = 2e-56 Identities = 574/864 (66%), Gaps = 16/864 (2%) Strand=Plus/Plus Query 162194 CGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACATCCCCCT 162253 |||| ||||| || || ||||||||||| || || | || || | | ||||| || | Sbjct 1508708 CGGAGCGCACATGGACTCCGCTGCACGGTGGGTAAGGAGCGCCTTTGGAAACATCACCTT 1508767 Query 162254 CGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCGTACTTGT 162313 | |||| |||||||| || ||||||| || ||| | ||||||||| ||| ||||| | Sbjct 1508768 CAAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTCGGACAAGTCATACTTAT 1508827 Query 162314 ACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTT 162373 || || | | ||||| || | || | || || | || ||||| |||| | Sbjct 1508828 GGCTCGAGGGGAGAGAACCAGGGACTTCAGGGATCCTTTGGATGGTGGCCCAGAGGTACT 1508887 Query 162374 CGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA---CCGTTTTATCGT 162430 | ||||| |||||||| |||| | |||||||||||||| || || || || Sbjct 1508888 CATCTGGGCTATACGTGTCCTGTGCCCACTCCATGAACTTTTGGATGTCCCCATTTTC-- 1508945 Query 162431 ATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACC--AGAAAACAC 162488 ||| | || || || ||| | || | |||||| ||||| || |||||| | Sbjct 1508946 -TAGCACATAGCCTACATATTCCCTACTGACCACAAAGTAGGCGCTGCCTGAGAAAAGAG 1509004 Query 162489 GGGTATGCGTATAGGAGGGGGCT---CTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | || || | ||| || |||| ||||| | || ||||| | | | || || Sbjct 1509005 GAGT-TGTG---AGG-GGCGGCTGGGCTTTGGCCACCCCAGTGTTCGTCAGCTTCCCGTC 1509059 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTC 162605 || || ||||| |||| ||||||| || ||| | | || | | ||||| || Sbjct 1509060 GACAACGGTGTGTCGCTTCTTCCACCTTTCCTCCTTGTTTGGAGGCATCTTCTCGGTTTC 1509119 Query 162606 TAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAG 162665 || |||| ||| || | ||| || | | ||||| || || ||||| |||| Sbjct 1509120 CAGGTTGTTTTCGCCCAGGAATGACTTGAGTTTCCTGACCATTTCCAGGTTGGTTTTAAT 1509179 Query 162666 GGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAG 162725 || ||||| | || ||||| || || | || ||||| || || | | ||||| Sbjct 1509180 AGGGAAGTCCATACCACAGAGGTTGATCAAGTACTTCCAGTTTGTACTCATGGCATACAG 1509239 Query 162726 ATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTC 162785 ||| | ||||| || || ||||| || |||||||| || || || || |||||||| Sbjct 1509240 GTCCCTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCAGGATGCATAAACAACGCTCTC 1509299 Query 162786 CAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGA 162845 || | |||| ||||||||||| | || || || | || |||||||| || | | Sbjct 1509300 CAGCTGGCTGGCCACAAAGACATTCTTCAAGCAGGACGCAATGCCCATCACCGCGGCTAA 1509359 Query 162846 GAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGAT 162905 ||| | || ||||| | || ||||| | ||| || | ||||||||| ||||| Sbjct 1509360 GAAGGGCTCCTCTGCTTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGAT 1509419 Query 162906 GGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTAT 162965 ||||||||| | ||||| | ||| || ||||| || || ||||| || || || || || Sbjct 1509420 GGCCCTCAGGAGCCTCTCAAGCATTTCAATCTTGTGATGAACCACTATGGAGTATGCGAT 1509479 Query 162966 GGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGTCCCTCACAAA 163025 ||| || || |||||||| ||| || | | || || || ||||| ||| | || Sbjct 1509480 GGGAAAGTCTGCCTCCTCTTTACTAAGGGGCTCTACAATATATTTGCGCATCCTGATGAA 1509539 Query 163026 CGCCGCACAGTCCTCCGTCATGTT 163049 | |||||||| |||||||| Sbjct 1509540 AGAGGCACAGTCACGGGTCATGTT 1509563 >seq76 Length=1782596 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/206 (72%), Gaps = 11/206 (5%) Strand=Plus/Minus Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACT-TGACTTTTAGG 171582 ||||| |||| |||||| || | |||||||||||||| ||||| | ||| | || || Sbjct 1694643 ACAGTGCCCAGGTGTAAAACCTGGCATATCACCTCCT----TCCCAATCTGAGTCTTGGG 1694588 Query 171583 ATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGG---T 171639 ||||| || | |||||||| || ||||| || ||||| || || || | ||| | Sbjct 1694587 GTCTTTGACCCGGAGAATGCTGGTGACAGACGTGGTCCCATTT-GA-GT-GCACGTGACT 1694531 Query 171640 TTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCT 171699 | |||||||| || ||||| | || | | ||||| || |||| ||||| | Sbjct 1694530 CTCGGTACTATTGTCAATTCCTGTCCCAGTGCCCTTCCAGGCGATGGCAGGGGCTGGGCG 1694471 Query 171700 AGCAGTAGCAGAGCAAGTTATGTTTA 171725 ||||| ||||||||||| ||||||| Sbjct 1694470 GGCAGTCGCAGAGCAAGTGATGTTTA 1694445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576767547459200