Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq76 210 3e-49 seq2928 132 6e-26 seq44238 87.8 2e-12 seq6987 84.2 3e-11 >seq76 Length=1782596 Score = 210 bits (232), Expect = 3e-49 Identities = 240/320 (75%), Gaps = 2/320 (1%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||| ||||||||||| ||||||| ||||||| || ||| | | ||| || ||| Sbjct 1691355 GTGGTGACACAGGATGAGAGAAAGCTGCTGCACACGCCTGCATCCTTAAGATGTTCTCTG 1691414 Query 171132 CAGACT-TCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGA 171190 | ||| | ||||| ||||||| || |||||||||| || | | ||||| Sbjct 1691415 -AAACTCCCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGA 1691473 Query 171191 GAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAA 171250 |||||| | |||| ||||||| ||| || || || |||||||| || |||| |||| Sbjct 1691474 AAACATGGTCACTTACAGCAAAGCCCATGGAGTTGTAGTCCAGCCTGCATATAGAGACAG 1691533 Query 171251 GATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTT 171310 | |||||||||| |||| |||||| ||| ||| |||||| || ||||| || ||| | Sbjct 1691534 GGTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACACAACCCT 1691593 Query 171311 AGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGG 171370 || || ||||| ||||||| || ||||| || || |||| |||||||| ||||| || Sbjct 1691594 GGACGATGAGGGCTGCTACATGTGTCTCTTCAATACTTTTGTTTCTGGGAAGATCTCAGG 1691653 Query 171371 GGTGGCCTGCCTCACCCTCT 171390 | |||||||||||||||| Sbjct 1691654 GACAGCCTGCCTCACCCTCT 1691673 Score = 141 bits (156), Expect = 1e-28 Identities = 183/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || || | |||||| |||||||| |||||||| || Sbjct 1694399 GTACAGCCCATAGTATTCCTTCACTACAACTATTTTGAAGACCACCTAAACATCACTTGC 1694458 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | ||||||||| | ||| || |||||| | ||| ||| |||||| Sbjct 1694459 TCTGCGACTGCCCGCCCAGCCCCTGCCATCGCCTGGAAGGGCACTGGGACAGGAATTGAC 1694518 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| |||| || || || ||||| || || ||||| ||||| | |||| Sbjct 1694519 AATAGTACCGAGAGTCACGTGCACTCAAATGGGACCACGTCTGTCACCAGCATTCTCCGG 1694578 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| |||| | || |||||||| || ||||| || | |||||||| Sbjct 1694579 GTCAAAGACCCCAAGACTCAGATTGGGAAGGAGGTGATATGCCAGGTTTTACACCTGGGC 1694638 Query 171633 AATGTAACTAACT 171645 | ||| | | ||| Sbjct 1694639 ACTGTGATTGACT 1694651 >seq2928 Length=1604220 Score = 132 bits (146), Expect = 6e-26 Identities = 128/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| |||||||||| ||||| ||||||||| ||| ||||||| Sbjct 1330724 AGGGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGGTGA 1330665 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| || || ||||||||| | |||| Sbjct 1330664 TGCCCCAGGCAGAGAACCAC------------GGCCCAGAAATCAAGGAGCATTTGAACT 1330617 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| |||||||| || | ||||| ||| ||| Sbjct 1330616 CCCTGGGAGAGAAGCTGAAGACCCTCAGGAGGCAGCTGCAGCGCTGT 1330570 >seq44238 Length=234 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 147295 CTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC-GAGAAGCCCGC 147353 ||||||||||| || || ||||| |||||||| || || || |||| ||||| ||| Sbjct 234 CTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTC-GTGCAGAGAATCCCAG 176 Query 147354 CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAG 147413 | | ||||| || ||||||| | ||| |||||||| | |||||| |||| ||| || Sbjct 175 GCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGACAG 116 Query 147414 CTCCTTAGAGTCCGTGGAGCCC 147435 ||||||| | ||||| ||| Sbjct 115 TTCCTTAGCATTTGTGGATCCC 94 >seq6987 Length=263106 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| | || ||||||||||| ||| | || || || || Sbjct 72584 GTACTCCCTGGTGTTCATCATTGGTGTGATAGGCAATGCCCTAGTGGTTCTGGTGCTGAT 72525 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGC 8720 | || ||| |||||| | | ||||||| ||||| ||| ||||||||||| Sbjct 72524 ACAGCACAGGAGGCTTCGAAGTATGACCAGCATCTACCTATTCAACCTGGC 72474 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| ||||| |||| |||| |||||||||||| ||||||| Sbjct 124277 TGGACCTGGCCATGCAGGTGACTGAGGTGATTGCCTACACCCACTGCTGTATCAACCCAA 124336 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| || ||||| ||||| | ||||| Sbjct 124337 TCATCTATGCCTTTGTTGGCGAGAGGTTCC 124366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581808998692800