Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq825 161 1e-33 seq2901 134 2e-25 seq6768 116 5e-20 >seq825 Length=2116948 Score = 161 bits (178), Expect = 1e-33 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || ||| |||| || ||| ||||| Sbjct 128393 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCGTCTAAGGCCATG 128446 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||||||| || |||| ||||||| || ||||||| ||| Sbjct 128447 GGCATCATGAACTCGTTCGTCAACGATATTTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 128506 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| | |||||||||| || ||| | |||||| | ||||| |||||||| Sbjct 128507 TTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGCGT 128566 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| |||||||||| ||| || || ||||||||||||| Sbjct 128567 CTGCTGCTGCCCGGGGAACTGGCCAAGCATGCTGTGTCCGAGGGCACCA 128615 Score = 140 bits (154), Expect = 5e-27 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || ||| |||| || ||| ||||| Sbjct 133331 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCGTCTAAGGCCATG 133278 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||||||| || |||| ||||||| || ||||||| ||| Sbjct 133277 GGCATCATGAACTCGTTCGTCAACGATATTTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 133218 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| | |||||||||| || ||| | |||||| | ||||| |||||||| Sbjct 133217 TTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGCGT 133158 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGC 725125 ||| | ||| ||| |||||||||| ||| || Sbjct 133157 CTGCTGCTGCCCGGGGAACTGGCCAAGCATGC 133126 >seq2901 Length=940433 Score = 134 bits (148), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||| | ||||||||||||||| |||| ||| || |||| ||||| Sbjct 930879 TACAAAGTGTTGAAGCAGGTGCACCCCGACACCGG-----CATT-TCGTCCAAGGCCATG 930932 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||| |||||||||||||| ||||| |||| ||||||| ||| || ||| Sbjct 930933 GGCATCATAAACTCGTTTGTCAATGACATCTTCGAACGCATCGCAGGCGAAGCTTCGCGC 930992 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| || |||||| Sbjct 930993 CTGGCGCATTACAACAAGCGCTCTACCATCACGTCCCGGGAGATCCAGACGGCTGTGCGC 931052 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||||| ||||| | |||||||| || |||||||||| Sbjct 931053 CTGCTGCTGCCGGGCGAGCTGGCTAAACACGCCGTGTCGGAGGGCACCA 931101 >seq6768 Length=181965 Score = 116 bits (128), Expect = 5e-20 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||| ||||| || || || || || ||||| || ||||| Sbjct 166417 TACAAGGTGCTGAAGCAAGTGCATCCG-GACACG--GGCATTTCGTCCAA--AG-CCATG 166364 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| |||||| ||| Sbjct 166363 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCTGGCGAGGCTTCCCGC 166304 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| | ||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 166303 TTGGCGCATTACAACAAGCGTTCTACCATCACTTCCCGGGAGATCCAGACGGCCGTGCGC 166244 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || |||| | |||||||| || |||||||||| Sbjct 166243 CTGCTGCTGCCGGGGGAGTTGGCTAAACACGCCGTGTCGGAGGGCACCA 166195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7155607793988724