Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq5500 111 2e-19 >seq5500 Length=354892 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 214080 TACGTTTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCA 214139 |||| || ||| |||| | ||| | ||||| || ||||| ||| | ||| |||| |||| Sbjct 126849 TACGGTTTGCAGTGGGCCAGGAGGTCTTTGGTCTGGTGCCTGGTCTGATGATGTATGCCA 126908 Query 214140 TTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAAT 214199 ||||||||| | ||||||||||| || || || ||||| ||||| ||||| || || | Sbjct 126909 CCATCTGGCTGCGGGAGCACAACAGAGTGTGTGATGTGCTTAAACAGGAGCATCCTGAGT 126968 Query 214200 GGAACGACGAACAGCTGTTCCAGA 214223 || | || |||| ||| ||||||| Sbjct 126969 GGGAGGATGAACGGCTCTTCCAGA 126992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721259368764480