Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6322 152 7e-32 seq12441 114 2e-20 seq116398 86.0 9e-12 >seq6322 Length=173588 Score = 152 bits (168), Expect = 7e-32 Identities = 158/207 (76%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 ||||| |||||||| || |||||||| || || | || |||||||| ||||| | ||| Sbjct 119790 TCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGATGCA 119731 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA 39778 ||||| ||||| |||||||| |||||||| || ||||| | |||| || ||||| || Sbjct 119730 AAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCACAACTCGTTCTCCATAG 119671 Query 39779 CTTGTATCATTATGT----ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG 39834 | | || || | | ||||| | | ||||| ||||| ||||| || |||||||| Sbjct 119670 GTAGCCTCTTTGTCTCCAAATCCAACACAGGGCCCAGTCAGCCTTCTTTTTCACACAAGG 119611 Query 39835 CATTGTTTCTATAGCATTAAAGAGATA 39861 |||||| || |||||||| |||||||| Sbjct 119610 CATTGTCTCAATAGCATTGAAGAGATA 119584 >seq12441 Length=306159 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| |||||||| || |||||| ||| | || || || || || || | Sbjct 72781 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 72840 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | ||||| ||||||||||||||||| ||||| || || ||||| || | || | ||| Sbjct 72841 TTAAAGATTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 72900 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| || ||||| | |||||| | | ||| || | ||||| |||| Sbjct 72901 TCTGAGAGATCTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 72951 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || || || || ||||| || |||||||| || || || | || Sbjct 76078 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 76137 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 76138 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 76197 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 76198 TTTCTTATACCAT 76210 Score = 105 bits (116), Expect = 9e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || || ||||||| | Sbjct 96476 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 96535 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | |||||| | || || ||| | || ||||| | ||||| | Sbjct 96536 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 96595 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || |||||| | || || ||||| || |||||||||| Sbjct 96596 GTTCCACTGTGGTGACTCCGCTGTACAGGCCTTGGATTACTTTCATGG 96643 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || || || || | |||||||| || ||||| ||||| || ||||||||||| ||| Sbjct 90263 GTCCCAGCGTTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 90322 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||||||| || | || ||||| | ||||| || | | || | ||||||| Sbjct 90323 TAGGTTTCAATTGCAGCGTCGATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 90382 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 90383 ATATGCTGTGGTCTTTC 90399 >seq116398 Length=207 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 ||||| | ||||| || ||||| |||| ||||||||||| ||||| | || || ||| Sbjct 120 AACATCAGACAGGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAA 61 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || || |||||||| || || || |||||||| ||||| | |||||||| ||| Sbjct 60 AACGTAAGGCCAGGCATCAGTTTCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684932202755280